Detailed information of component protein
Summary
| Component ID | T6CP009362 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00224  (Type i2) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS13825 |
| Coordinate (Strand) | 2838541..2839032 (-) |
| NCBI ID | WP_002210014.1 |
| RefSeq | NC_009708 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1e-35 | 6..146 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MAIPVYLWLKDDGGADIKGSVDVQSREGSIEIVAQDHNLYIPTDNNTGKLTGTRIHTPFVFTKEIDASTPYLYKAVTTGQTLKTAEFKWYRIDDAGQEVEYFNTKLENVKVVKVAPKMHDVKDPAKEKHNHLELVELRYEKITWTFKDGNIIHSDSWNERATA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9872 | - | - |
Protein sequence: 164 a.a.
>T6CP009362 NC_009708:c2839032-2838541 [Yersinia pseudotuberculosis IP 31758] [TssD]
MAIPVYLWLKDDGGADIKGSVDVQSREGSIEIVAQDHNLYIPTDNNTGKLTGTRIHTPFVFTKEIDASTPYLYKAVTTGQ
TLKTAEFKWYRIDDAGQEVEYFNTKLENVKVVKVAPKMHDVKDPAKEKHNHLELVELRYEKITWTFKDGNIIHSDSWNER
ATA*
MAIPVYLWLKDDGGADIKGSVDVQSREGSIEIVAQDHNLYIPTDNNTGKLTGTRIHTPFVFTKEIDASTPYLYKAVTTGQ
TLKTAEFKWYRIDDAGQEVEYFNTKLENVKVVKVAPKMHDVKDPAKEKHNHLELVELRYEKITWTFKDGNIIHSDSWNER
ATA*
Nucleotide sequence: 492 bp
>T6CP009362 NC_009708:c2839032-2838541 [Yersinia pseudotuberculosis IP 31758] [TssD]
ATGGCAATTCCAGTATATCTGTGGCTGAAAGACGACGGCGGTGCGGACATCAAGGGTTCTGTTGATGTACAAAGCCGTGA
AGGCAGCATTGAGATCGTGGCACAGGATCATAACCTGTACATCCCAACCGATAACAACACCGGCAAACTGACCGGTACCC
GTATCCACACCCCGTTCGTTTTCACCAAAGAAATCGATGCGTCGACCCCGTACCTGTACAAAGCGGTGACCACCGGTCAG
ACACTGAAAACCGCCGAGTTCAAATGGTACCGCATTGATGACGCTGGCCAGGAAGTTGAATATTTCAACACCAAACTGGA
AAACGTCAAAGTGGTCAAAGTTGCGCCGAAAATGCACGACGTGAAAGATCCGGCGAAAGAGAAGCACAACCACCTGGAAC
TGGTGGAACTGCGCTACGAAAAAATCACCTGGACCTTTAAAGACGGCAACATCATTCATTCCGATTCGTGGAACGAGCGC
GCCACCGCGTAG
ATGGCAATTCCAGTATATCTGTGGCTGAAAGACGACGGCGGTGCGGACATCAAGGGTTCTGTTGATGTACAAAGCCGTGA
AGGCAGCATTGAGATCGTGGCACAGGATCATAACCTGTACATCCCAACCGATAACAACACCGGCAAACTGACCGGTACCC
GTATCCACACCCCGTTCGTTTTCACCAAAGAAATCGATGCGTCGACCCCGTACCTGTACAAAGCGGTGACCACCGGTCAG
ACACTGAAAACCGCCGAGTTCAAATGGTACCGCATTGATGACGCTGGCCAGGAAGTTGAATATTTCAACACCAAACTGGA
AAACGTCAAAGTGGTCAAAGTTGCGCCGAAAATGCACGACGTGAAAGATCCGGCGAAAGAGAAGCACAACCACCTGGAAC
TGGTGGAACTGCGCTACGAAAAAATCACCTGGACCTTTAAAGACGGCAACATCATTCATTCCGATTCGTGGAACGAGCGC
GCCACCGCGTAG