Detailed information of component protein
Summary
| Component ID | T6CP009304 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00224  (Type i2) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (229 a.a.); Nucleotide sequence (687 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS13835 |
| Coordinate (Strand) | 2840772..2841458 (-) |
| NCBI ID | WP_012105360.1 |
| RefSeq | NC_009708 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 1.2e-41 | 17..215 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-192 | MNPHLTEHPPVGDIDVLLQDTWLQVISLRQGVTCAEGEGQAFWQRCVADIERVHQALKDAGHSEQSCQHIRYAQCALLDETVKGRGVQDDAYFVWCHSPLQAHFFNTLDAGSQLYEQMRAVLREPAPDSAVLTCFHRVLMLGFLGGYASPAASEREQLIDQLSVQVPAFSVAPSGGILASAASRNRLGIWLR |
| Transmembrane helix | 193-212 | YWPVRLGLAALMVALLWWGL |
| Outside | 213-228 | DHWLSGLLTTLLPEPV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9895 | - | - |
Protein sequence: 229 a.a.
>T6CP009304 NC_009708:c2841458-2840772 [Yersinia pseudotuberculosis IP 31758] [TssL]
MNPHLTEHPPVGDIDVLLQDTWLQVISLRQGVTCAEGEGQAFWQRCVADIERVHQALKDAGHSEQSCQHIRYAQCALLDE
TVKGRGVQDDAYFVWCHSPLQAHFFNTLDAGSQLYEQMRAVLREPAPDSAVLTCFHRVLMLGFLGGYASPAASEREQLID
QLSVQVPAFSVAPSGGILASAASRNRLGIWLRYWPVRLGLAALMVALLWWGLDHWLSGLLTTLLPEPV*
MNPHLTEHPPVGDIDVLLQDTWLQVISLRQGVTCAEGEGQAFWQRCVADIERVHQALKDAGHSEQSCQHIRYAQCALLDE
TVKGRGVQDDAYFVWCHSPLQAHFFNTLDAGSQLYEQMRAVLREPAPDSAVLTCFHRVLMLGFLGGYASPAASEREQLID
QLSVQVPAFSVAPSGGILASAASRNRLGIWLRYWPVRLGLAALMVALLWWGLDHWLSGLLTTLLPEPV*
Nucleotide sequence: 687 bp
>T6CP009304 NC_009708:c2841458-2840772 [Yersinia pseudotuberculosis IP 31758] [TssL]
ATGAATCCTCACCTAACCGAACACCCCCCAGTCGGGGATATTGACGTCCTGTTGCAGGACACCTGGCTACAGGTGATCAG
CCTGCGTCAAGGGGTAACCTGTGCCGAGGGCGAAGGGCAGGCATTCTGGCAGCGCTGTGTGGCGGACATTGAACGTGTCC
ATCAGGCGCTGAAAGACGCCGGTCACAGCGAGCAGAGTTGCCAGCACATCCGATACGCCCAATGTGCACTGCTGGATGAG
ACCGTGAAAGGGCGCGGTGTACAGGATGACGCCTACTTCGTGTGGTGCCATTCGCCCTTACAGGCGCATTTTTTCAATAC
CCTGGATGCCGGGAGCCAGTTGTACGAGCAGATGCGCGCCGTGTTGCGTGAACCTGCGCCGGACAGCGCGGTACTGACCT
GTTTTCACCGGGTATTGATGTTGGGCTTCCTCGGCGGGTACGCCTCCCCGGCGGCTTCTGAACGGGAGCAACTGATCGAT
CAACTGAGCGTGCAGGTACCGGCGTTCAGTGTCGCGCCATCCGGTGGGATCCTGGCAAGCGCCGCCTCCCGCAACCGGTT
GGGGATCTGGCTGCGTTACTGGCCGGTACGGCTCGGGCTGGCTGCGCTGATGGTCGCGCTGTTGTGGTGGGGCCTTGATC
ACTGGCTGTCCGGTCTGTTAACCACCTTACTGCCGGAGCCGGTGTAA
ATGAATCCTCACCTAACCGAACACCCCCCAGTCGGGGATATTGACGTCCTGTTGCAGGACACCTGGCTACAGGTGATCAG
CCTGCGTCAAGGGGTAACCTGTGCCGAGGGCGAAGGGCAGGCATTCTGGCAGCGCTGTGTGGCGGACATTGAACGTGTCC
ATCAGGCGCTGAAAGACGCCGGTCACAGCGAGCAGAGTTGCCAGCACATCCGATACGCCCAATGTGCACTGCTGGATGAG
ACCGTGAAAGGGCGCGGTGTACAGGATGACGCCTACTTCGTGTGGTGCCATTCGCCCTTACAGGCGCATTTTTTCAATAC
CCTGGATGCCGGGAGCCAGTTGTACGAGCAGATGCGCGCCGTGTTGCGTGAACCTGCGCCGGACAGCGCGGTACTGACCT
GTTTTCACCGGGTATTGATGTTGGGCTTCCTCGGCGGGTACGCCTCCCCGGCGGCTTCTGAACGGGAGCAACTGATCGAT
CAACTGAGCGTGCAGGTACCGGCGTTCAGTGTCGCGCCATCCGGTGGGATCCTGGCAAGCGCCGCCTCCCGCAACCGGTT
GGGGATCTGGCTGCGTTACTGGCCGGTACGGCTCGGGCTGGCTGCGCTGATGGTCGCGCTGTTGTGGTGGGGCCTTGATC
ACTGGCTGTCCGGTCTGTTAACCACCTTACTGCCGGAGCCGGTGTAA