Detailed information of component protein


Summary

Component ID T6CP002240
Component protein type TssC
T6SS ID (Type) T6SS00224 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (517 a.a.); Nucleotide sequence (1551 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS13845
Coordinate (Strand) 2842819..2844369 (-)
NCBI ID WP_012104583.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.7e-122 93..391
VipB_2 PF18945.2 3.7e-39 401..511
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-516 MLMSVQENRAQGTATTVLKNSPAAQGVYAALFEKINLSPVSSLAGIEAFQNNDALAEATTDERVTAAVSVFLDLLKQSAKKVEKLDKTLLDGHIAALDDQISRQLDAVMHHPDFQRVESTWRGVKSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEISQSGLYAQTYIQEYDTPGGEPIAAAISNYEFDRGPQDIALLRNISKVAAAAHMPFIGSVGPAFFGKENMEEVAAIKDIGNYFDRAEYIKWKAFRDSDDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHERYLWTNASFAFAANMVKSFIKNGWCVQIRGPQAGGAVTNLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYSCFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWVRGLVTEMTDPGDDLQASHPLRDAKVTVEDIEDNPGFFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9333 - -


  Protein sequence: 517 a.a.    

>T6CP002240 NC_009708:c2844369-2842819 [Yersinia pseudotuberculosis IP 31758] [TssC]
MLMSVQENRAQGTATTVLKNSPAAQGVYAALFEKINLSPVSSLAGIEAFQNNDALAEATTDERVTAAVSVFLDLLKQSAK
KVEKLDKTLLDGHIAALDDQISRQLDAVMHHPDFQRVESTWRGVKSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEIS
QSGLYAQTYIQEYDTPGGEPIAAAISNYEFDRGPQDIALLRNISKVAAAAHMPFIGSVGPAFFGKENMEEVAAIKDIGNY
FDRAEYIKWKAFRDSDDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHERYLWTNASFAFAANMVKSFIKNGW
CVQIRGPQAGGAVTNLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYSCFFSANSAQKPALYDTAD
ATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWVRGLVTEMTDPGDDLQASHPLRDAKVTVEDIE
DNPGFFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA*

  Nucleotide sequence: 1551 bp    

>T6CP002240 NC_009708:c2844369-2842819 [Yersinia pseudotuberculosis IP 31758] [TssC]
ATGCTGATGTCTGTACAGGAAAACCGTGCGCAGGGTACTGCGACGACCGTATTAAAGAATAGCCCTGCGGCACAAGGGGT
TTACGCCGCCTTGTTTGAAAAAATCAACCTGAGCCCGGTCTCCTCACTGGCCGGTATCGAGGCGTTCCAGAACAACGATG
CGCTGGCGGAAGCCACCACCGATGAGCGCGTTACCGCCGCCGTCAGTGTCTTTTTAGACCTGCTGAAGCAGTCGGCGAAG
AAAGTAGAAAAACTGGATAAAACCCTGCTGGACGGCCATATTGCCGCACTGGATGACCAAATCAGCCGCCAGTTGGACGC
GGTAATGCACCACCCCGATTTCCAGCGGGTGGAATCGACCTGGCGTGGTGTGAAGTCGCTGATCGATCAGACCGATTTCC
GCCAGAACGTGCGCATCGAGCTGCTGGATATCAGTAAAGATCATCTGGTGCAGGATTTTGAAGATGCCCCAGAAATTTCA
CAAAGCGGTTTATACGCCCAGACCTATATTCAGGAATACGACACCCCCGGCGGTGAACCGATTGCTGCGGCTATCTCCAA
CTACGAGTTTGACCGTGGCCCGCAGGATATCGCCTTATTGCGCAATATCTCCAAGGTAGCCGCGGCGGCCCATATGCCGT
TTATCGGCTCAGTGGGTCCGGCGTTCTTTGGTAAAGAGAACATGGAAGAGGTGGCGGCCATCAAAGATATCGGCAACTAC
TTTGACCGTGCCGAATACATCAAATGGAAAGCTTTCCGCGACTCGGATGATTCCCGCTATATCGGCCTGACCATGCCGCG
CGTACTGGGGCGTTTGCCTTATGGGCCAGACACCGTGCCGGTGCGCAGCTTTAACTACGTAGAGCAGGTGAAAGGGCCGG
ATCATGAGCGTTATCTGTGGACCAACGCTTCGTTTGCCTTTGCTGCCAACATGGTGAAAAGCTTCATTAAAAATGGCTGG
TGTGTGCAGATCCGTGGCCCGCAGGCCGGTGGTGCCGTCACCAACTTACCGATCCACCTGTACGATCTGGGTACCGGTAA
TCAGGTCAAAATTCCGTCAGAAGTGATGATCCCGGAAACCCGCGAGTTCGAGTTTGCCAATCTGGGCTTTATCCCGCTGT
CGTACTACAAAAACCGCGATTACTCGTGCTTCTTCTCGGCCAACTCGGCGCAGAAACCGGCGCTGTATGACACCGCGGAT
GCCACGGCCAACAGCCGCATCAACGCCCGTTTGCCGTATATCTTCCTGCTGTCGCGCATTGCCCATTATCTGAAACTGAT
CCAGCGCGAGAACATCGGCACCACCAAAGATCGCCGTCTGCTGGAGCTGGAGCTGAACAACTGGGTGCGCGGGCTGGTGA
CGGAAATGACTGATCCGGGTGATGATTTGCAGGCGTCCCATCCCCTGCGTGATGCCAAAGTGACGGTCGAAGATATCGAA
GACAACCCCGGCTTCTTCCGCGTCAAGCTGTATGCGGTACCGCATTTCCAGGTGGAAGGGATGGACGTCAATCTGTCATT
GGTTTCCCAAATGCCAAAGGCTAAGGCATAA