Detailed information of component protein


Summary

Component ID T6CP002235
Component protein type TssF
T6SS ID (Type) T6SS00224 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (588 a.a.); Nucleotide sequence (1764 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS13745
Coordinate (Strand) 2811602..2813365 (-)
NCBI ID WP_012105344.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.9e-185 1..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-587 MDDLTLRYFDAEMRYLREAGEEFARAHPDRAAGLNLDKAGARDPYVERLFEGFAFLMGRMREKLDDDLPELTEGLVSLLWPHYLRTIPSLSIVEFTPQWQGMKERMGVSKGFEVLSRPIGERETRCRYTTTQDMDLLPLTLSRAKLDSEPDGRSVIRLRFDCSALADWSRINLSRLPLYFDADAPLACALHEALTLNTAKLWIRLPGQADRQPLDGHFAPLGFGEQDTLWPKADSAFSGYQLLLEYFTFREKFMFVALQGLDGIELPAELPWFEIDVVLEKRWQHDFSFSEKNLRLHCVPVINLFPLESDPLSLSSLQTEYLLRPMRIQDGYTEVYSVDSVISSRHTGHQVYVPFTSFRHKGGMLRHDAPEYYYHTRVKRGPSGLHDTWLVLGGEAFDNHSVPDNENLSLSLTGTNGQLPRKALQSTVLDTAVKSTGAQVRVRNLSAPSLPCYPPNRDRFHWRVLSHLGSSFLWMMDNAEVLRGTLALYDWTDNEMNRRRLEAIAEVKHSEIERFERGYLLRGVHIEITLDSNGFTGTGDICLFGEMLSRFFALYTDIHLFNRLTLILQPTGERLEWEENHQSRLPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9965 - -


  Protein sequence: 588 a.a.    

>T6CP002235 NC_009708:c2813365-2811602 [Yersinia pseudotuberculosis IP 31758] [TssF]
MDDLTLRYFDAEMRYLREAGEEFARAHPDRAAGLNLDKAGARDPYVERLFEGFAFLMGRMREKLDDDLPELTEGLVSLLW
PHYLRTIPSLSIVEFTPQWQGMKERMGVSKGFEVLSRPIGERETRCRYTTTQDMDLLPLTLSRAKLDSEPDGRSVIRLRF
DCSALADWSRINLSRLPLYFDADAPLACALHEALTLNTAKLWIRLPGQADRQPLDGHFAPLGFGEQDTLWPKADSAFSGY
QLLLEYFTFREKFMFVALQGLDGIELPAELPWFEIDVVLEKRWQHDFSFSEKNLRLHCVPVINLFPLESDPLSLSSLQTE
YLLRPMRIQDGYTEVYSVDSVISSRHTGHQVYVPFTSFRHKGGMLRHDAPEYYYHTRVKRGPSGLHDTWLVLGGEAFDNH
SVPDNENLSLSLTGTNGQLPRKALQSTVLDTAVKSTGAQVRVRNLSAPSLPCYPPNRDRFHWRVLSHLGSSFLWMMDNAE
VLRGTLALYDWTDNEMNRRRLEAIAEVKHSEIERFERGYLLRGVHIEITLDSNGFTGTGDICLFGEMLSRFFALYTDIHL
FNRLTLILQPTGERLEWEENHQSRLPG*

  Nucleotide sequence: 1764 bp    

>T6CP002235 NC_009708:c2813365-2811602 [Yersinia pseudotuberculosis IP 31758] [TssF]
ATGGACGACTTAACCCTGCGTTATTTTGACGCTGAAATGCGCTACCTGCGTGAAGCGGGCGAAGAGTTTGCCCGCGCGCA
CCCTGATCGGGCTGCCGGATTAAATCTGGATAAAGCCGGGGCGCGTGACCCCTATGTGGAACGCCTGTTTGAAGGCTTTG
CCTTCCTGATGGGCCGCATGCGAGAAAAACTGGATGATGACCTGCCGGAGCTGACCGAAGGGTTGGTCAGCCTGCTGTGG
CCGCACTACCTGCGCACTATTCCGTCGCTTTCTATTGTGGAGTTCACCCCACAATGGCAGGGGATGAAAGAACGCATGGG
GGTGAGCAAAGGTTTTGAAGTGCTGTCCCGCCCCATTGGTGAGCGTGAAACTCGCTGCCGCTACACCACCACGCAGGATA
TGGACTTGCTCCCGCTGACATTGAGCCGAGCCAAATTGGACAGTGAACCCGATGGCCGGTCGGTTATCCGGCTGCGCTTT
GATTGCAGCGCGCTGGCCGACTGGAGCCGTATCAACCTGAGCCGCCTGCCGCTCTATTTTGATGCCGATGCGCCGCTGGC
CTGCGCCCTGCATGAGGCGCTGACCCTGAATACCGCCAAACTCTGGATCCGTTTGCCGGGGCAGGCTGATCGCCAGCCGC
TGGACGGCCATTTCGCGCCGCTGGGGTTCGGGGAGCAGGATACACTGTGGCCGAAGGCCGACAGTGCGTTCAGTGGTTAT
CAGCTCTTGCTGGAGTACTTTACCTTCCGCGAAAAGTTTATGTTTGTCGCGTTGCAGGGGCTGGATGGGATCGAGCTGCC
GGCGGAACTGCCGTGGTTTGAGATTGATGTGGTGCTGGAAAAACGCTGGCAACATGATTTTTCGTTCTCCGAAAAGAACC
TGCGCCTGCATTGTGTGCCGGTGATTAACCTGTTCCCGCTGGAATCGGACCCACTGTCGCTCTCTTCATTACAGACCGAA
TACCTGCTGCGCCCAATGCGCATTCAGGACGGTTATACCGAAGTGTATTCGGTGGACTCGGTGATCTCCTCGCGTCATAC
CGGGCATCAGGTCTATGTCCCGTTCACCAGTTTTCGCCATAAGGGCGGGATGCTGCGCCATGATGCGCCGGAATATTACT
ACCATACGCGGGTCAAACGCGGGCCTTCGGGGCTGCACGATACCTGGCTGGTGCTGGGAGGCGAGGCGTTTGATAACCAT
AGCGTACCCGATAATGAGAATCTGTCGCTGAGCCTGACCGGCACCAACGGGCAATTACCGCGTAAAGCGCTGCAAAGCAC
GGTGCTGGATACCGCGGTGAAATCCACCGGGGCTCAGGTTCGGGTGCGTAATCTGTCCGCGCCGTCATTGCCGTGTTACC
CACCCAACCGCGACCGTTTTCACTGGCGGGTACTGAGCCATCTGGGCAGCAGTTTTCTGTGGATGATGGATAACGCTGAA
GTGCTGCGCGGCACGCTGGCGCTGTATGACTGGACGGACAACGAAATGAACCGCCGTCGGCTGGAGGCTATCGCCGAGGT
CAAACACAGCGAGATTGAACGCTTTGAACGGGGCTATTTGTTGCGCGGGGTGCACATTGAAATCACCCTCGACAGCAACG
GCTTTACCGGCACCGGGGATATCTGTCTGTTCGGGGAAATGCTCAGTCGCTTCTTTGCCCTGTATACCGATATTCATCTG
TTTAATCGCCTGACTCTGATACTGCAACCGACAGGAGAACGTTTGGAATGGGAAGAGAATCATCAGTCCCGCCTTCCCGG
CTAA