Detailed information of component protein


Summary

Component ID T6CP009361
Component protein type TssA
T6SS ID (Type) T6SS00224 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (534 a.a.); Nucleotide sequence (1602 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS13760
Coordinate (Strand) 2815051..2816652 (-)
NCBI ID WP_012105347.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 7.3e-80 230..490
ImpA_N PF06812.14 2e-20 33..138
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-533 MATLTTLLTACAAEPEPLLQQARQQVALWERWLQPVTPDKHTGEDPGYDDHFQQMREEVNKLSGADTTLTCELAEKLFTTHGKDVRVATYYVWARLHRDGEAGLADGLSLLAGLITRFGEGLHPLRATSRKTALEWLAGSRMRDSLSLYPEVDKADFERIVGALALIEQGLSLWDEGVRPQLGGLYTALENRLVQSGGLNAVVPQNSSGSSSAGSLNPANTASPALRPVQSGRDLLDQTKTLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVNGRTRLVPPRPEYRVQLKRLYLQQNWLALLEQAESIFAEGVNHFWLDVQWYLHQALSKAGAPFDGWASCITQDLRLLLTRLPGLEGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVSSGEDGILLLEPEALAQADSEGIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSGLDSSGALLTLPQWEPGLVFEVKARRLKLLRMKAQRGDSDKTRLHAEMESLLSGLIALDPARAAVLCG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.4714 pos: 10-11. LTA-CA. MATLTTLLTA


  Protein sequence: 534 a.a.    

>T6CP009361 NC_009708:c2816652-2815051 [Yersinia pseudotuberculosis IP 31758] [TssA]
MATLTTLLTACAAEPEPLLQQARQQVALWERWLQPVTPDKHTGEDPGYDDHFQQMREEVNKLSGADTTLTCELAEKLFTT
HGKDVRVATYYVWARLHRDGEAGLADGLSLLAGLITRFGEGLHPLRATSRKTALEWLAGSRMRDSLSLYPEVDKADFERI
VGALALIEQGLSLWDEGVRPQLGGLYTALENRLVQSGGLNAVVPQNSSGSSSAGSLNPANTASPALRPVQSGRDLLDQTK
TLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVNGRTRLVPPRPEYRVQLKRLYLQQNWLALLEQAESIFAEGVNHF
WLDVQWYLHQALSKAGAPFDGWASCITQDLRLLLTRLPGLEGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVSS
GEDGILLLEPEALAQADSEGIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSGLDSSGALLTLPQWE
PGLVFEVKARRLKLLRMKAQRGDSDKTRLHAEMESLLSGLIALDPARAAVLCG*

  Nucleotide sequence: 1602 bp    

>T6CP009361 NC_009708:c2816652-2815051 [Yersinia pseudotuberculosis IP 31758] [TssA]
ATGGCGACGTTAACTACCTTGCTCACCGCTTGTGCCGCAGAGCCTGAGCCACTTTTACAGCAGGCCAGACAACAGGTTGC
GCTCTGGGAACGTTGGTTGCAACCGGTGACACCCGATAAGCATACCGGTGAAGACCCCGGTTACGATGACCACTTCCAAC
AGATGCGTGAAGAGGTCAATAAGCTCTCGGGTGCCGATACCACGCTGACCTGCGAGCTGGCTGAAAAGCTGTTCACCACA
CACGGCAAGGATGTGCGGGTGGCAACCTATTACGTCTGGGCGCGGTTGCACCGTGACGGCGAGGCCGGGCTGGCGGATGG
CCTTTCCCTGCTGGCTGGGCTGATCACGCGCTTTGGTGAGGGCCTGCATCCGCTGCGTGCAACCAGCCGGAAAACCGCGT
TGGAGTGGCTGGCCGGTTCCCGGATGCGCGACAGCTTGTCACTTTACCCGGAAGTGGATAAAGCCGATTTTGAGCGTATC
GTGGGCGCACTGGCCCTTATCGAACAGGGGCTCAGTCTCTGGGACGAAGGTGTCCGGCCGCAACTGGGCGGGTTGTATAC
CGCCCTGGAAAACCGCCTCGTGCAATCTGGTGGGCTAAATGCCGTGGTGCCGCAAAACAGCAGCGGGTCATCATCGGCAG
GCAGCTTGAACCCAGCCAACACGGCGTCACCGGCGTTGCGGCCAGTGCAATCGGGACGTGACCTGCTCGATCAGACCAAA
ACGCTGGCAAAATACCTGCGCAACCAGCCGCAGGGCTGGCTCTCCGGGCATCATCTTATCAAAAGCGTGCGCTGGGATAC
GGTACACCAGTCACCGCCGTTGGATGTGAACGGACGGACCCGGCTGGTACCGCCGCGCCCGGAATATCGCGTACAACTCA
AGCGCCTTTATCTGCAACAAAACTGGCTGGCGTTGCTGGAACAGGCCGAATCGATATTTGCCGAAGGGGTTAACCATTTC
TGGCTCGATGTGCAGTGGTACCTGCATCAGGCCCTCAGCAAAGCGGGGGCCCCATTCGATGGCTGGGCGAGCTGTATCAC
GCAGGATTTACGGTTATTACTGACCCGGCTGCCGGGGCTGGAAGGGCTATGCTGGAGTGACGGCACGCCATTTGCCGATG
AGGTGACGCTGGGGTGGATAAACCAGCAGGTACTGGAGTCGGTCTCGGGCTGGGGCAGCGAGCCGGCCGCCGTTTCATCC
GGTGAGGATGGCATTCTGTTGCTGGAGCCAGAAGCTTTGGCTCAGGCGGACAGCGAAGGAATTGAAGCGGCGCTTAACTG
GTTGCAGTCACGACCGGGGATCACCACGGCGCGCCATCAGTGGCTGCTGCGTCTGGTGATGGCCCGGGTGGCGGAGCAGT
ACGGTAAGAACGATATGGCCTTGCATCTGCTGAGTGGCCTTGATAGCAGCGGCGCGTTGTTGACCTTGCCACAGTGGGAG
CCGGGGTTGGTGTTTGAAGTTAAAGCCCGCCGTTTGAAGCTGTTGCGTATGAAGGCACAGCGGGGTGACAGTGATAAAAC
CCGCCTGCATGCTGAAATGGAAAGCCTGCTCAGTGGGCTTATCGCCCTCGACCCGGCCCGTGCGGCCGTATTATGCGGAT
AA