Detailed information of component protein


Summary

Component ID T6CP009360
Component protein type TssA
T6SS ID (Type) T6SS00224 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (456 a.a.); Nucleotide sequence (1368 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS13725
Coordinate (Strand) 2808154..2809521 (-)
NCBI ID WP_012105341.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 1e-43 303..448
ImpA_N PF06812.14 1.5e-20 4..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-455 MISNIERTLKTGGDPRALADFTTLRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTVGLAGLCEGLELLAGLVCHQWRGLWPPQTHARVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCTQLQTLELKHLCKLDGVRLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLMAVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQARGDALLSQAQQLWPASQEVKRLSTLWQQQRAAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQQPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLIASPGVQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9912 - -


  Protein sequence: 456 a.a.    

>T6CP009360 NC_009708:c2809521-2808154 [Yersinia pseudotuberculosis IP 31758] [TssA]
MISNIERTLKTGGDPRALADFTTLRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTVGLAGLCE
GLELLAGLVCHQWRGLWPPQTHARVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCTQLQTLELKHLCKLDGV
RLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQAR
GDALLSQAQQLWPASQEVKRLSTLWQQQRAAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQ
QPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLIASPGVQ*

  Nucleotide sequence: 1368 bp    

>T6CP009360 NC_009708:c2809521-2808154 [Yersinia pseudotuberculosis IP 31758] [TssA]
ATGATATCGAATATTGAACGCACACTGAAAACCGGTGGCGACCCGCGTGCACTGGCGGATTTCACCACACTGCGGGGTGA
ATTAAATAAACTGGCCCACCCGGCCCGTCCGGATGTTGACTGGGCGCGGGTTGAGCAACTGTGTCTGGCGCTATTTCGCC
AGAACGGCGTTGAGTTACAGACTGCCGTTGATTTTACCCTGGCACGAACGCACACCGTTGGGTTGGCGGGCTTATGTGAA
GGGCTGGAACTGTTGGCGGGGTTGGTCTGCCATCAATGGCGTGGGTTATGGCCACCGCAAACGCATGCCCGGGTGGCGTT
ACTGGCCTGGTTGAGCGACCGGCTGCAGCAAGTGTGGCGCACCATGACGCTGTGCTACGGTGACCTGGCGCAGGTGTACC
GGGCAGAGCGGGCGCTGGAACAGTTGTGTACGCAGTTGCAAACGCTGGAGCTCAAACATTTGTGCAAGCTGGACGGGGTT
CGTTTGATGCTGCATAACGCGGCGCAGCGGTTGGAAAGTACCGAGGCCGTGTCTGGCCTTGCGAAACCACGGGGTGCCTC
TGAACCGCCCGAGTCGCTGCGATTTGCCTCTGTCCCGGTCAGTGAACCACTGGTGTATATTATCAGCGAACCGGCCCCGC
CACCTGTTCAGGTGGTTTTACCTGCCTCACCTCCGCGCTGGAAGGCGGGCCACGGTTTTGCCGCGGGGTTATCGTTGATG
GCGGTGCTGATGGCCGGCAGTTTCGTTATCTGGCAGTCGGTATCATCGGATCCCGTGAGGGAAACATTGCTGGCCACTGC
CAGTCCTTTGCCGATACCGCTGAGTGCTAACTCAATAGCTGAACTGAAAAAACAGGCTTCAGATGTTGAGTGGGCACGTC
TGGCGGAACCGGTGTTGCAAGCCAGTGCGACGCAGTTAGATCAACTGGCACAGTTACCGCCGTTATGGGCGCAGGCTCGG
GGGGATGCCTTGCTATCTCAGGCGCAACAACTGTGGCCCGCGAGTCAAGAGGTCAAACGGTTGAGCACTTTGTGGCAGCA
ACAGCGAGCAGCCGGTGCTGCGCCCTTGGTAGAGTTGAAACACTATGCATTGGCGCAAGACCGTTTGCGGCAACTGGCAG
AACGACTGAATAGTCTGGATGAGAAAAAACGCGGATATATGACGGTCTCCGAACTGAAATCTGCCGTCTTTGCTATCCAA
CAGCCGCTGGCACAGGCCGTGCCACTGGAAGAACTGCTGCGGCAATATCAGGAACAATTAGAATCAGGGCAAACTCCATC
CTCAGCACTGCGTCAACAGATTGACAGCCGGTTTAGTCAATTGCTGAACCGCTATGCGTTGCTGATCGCATCTCCTGGCG
TTCAGTAA