Detailed information of component protein


Summary

Component ID T6CP011610
Component protein type PAAR
T6SS ID (Type) T6SS00224 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (372 a.a.); Nucleotide sequence (1116 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS13755
Coordinate (Strand) 2813918..2815033 (-)
NCBI ID WP_012105346.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF3289 PF11692.10 5.8e-82 169..369
PAAR_motif PF05488.15 9.2e-08 9..53
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-371 MAKGYYLGVGDETTCGGVIIEGDATHVLMGKAVAREQDRVTCGKHPGTYIIIGHVPGDSVNGRKFAGTLNSQSNCPCKAWFIPSLVHDTYEFSSMITGESNEQQTQNSGTQQDKKKPEPLIPPVLIFDTKKRMDDYAAEDMRYGDITEDVLKKKFHLTDVSARVNPYTTVNRQSSTKILFDEFRDLSDAFSFYGEYKGVIRKMITHMEKNTGKPYSDPLLDKALREQILNDKSPNSSLLKIKEILRDYIDWQEQIYPLDNENELRKNIATSVLPKFNDYSDRINGLVITVHDTWSTHITLQSLKITGDTYTATIKYRVQDHFGLDNDDISNHIYRQLRIFRIWFVLQRGEMYSYRPFITEMNTVVTIEGKR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9826 - -


  Protein sequence: 372 a.a.    

>T6CP011610 NC_009708:c2815033-2813918 [Yersinia pseudotuberculosis IP 31758] [PAAR]
MAKGYYLGVGDETTCGGVIIEGDATHVLMGKAVAREQDRVTCGKHPGTYIIIGHVPGDSVNGRKFAGTLNSQSNCPCKAW
FIPSLVHDTYEFSSMITGESNEQQTQNSGTQQDKKKPEPLIPPVLIFDTKKRMDDYAAEDMRYGDITEDVLKKKFHLTDV
SARVNPYTTVNRQSSTKILFDEFRDLSDAFSFYGEYKGVIRKMITHMEKNTGKPYSDPLLDKALREQILNDKSPNSSLLK
IKEILRDYIDWQEQIYPLDNENELRKNIATSVLPKFNDYSDRINGLVITVHDTWSTHITLQSLKITGDTYTATIKYRVQD
HFGLDNDDISNHIYRQLRIFRIWFVLQRGEMYSYRPFITEMNTVVTIEGKR*

  Nucleotide sequence: 1116 bp    

>T6CP011610 NC_009708:c2815033-2813918 [Yersinia pseudotuberculosis IP 31758] [PAAR]
ATGGCAAAAGGCTATTACCTTGGGGTTGGGGATGAAACAACCTGCGGCGGCGTGATCATCGAAGGTGACGCCACACATGT
CTTGATGGGTAAAGCGGTGGCCCGTGAACAAGACAGAGTGACCTGCGGTAAACATCCGGGAACCTATATTATTATCGGCC
ATGTTCCTGGCGATTCGGTAAATGGCCGCAAGTTTGCTGGCACCTTGAATAGTCAAAGCAATTGCCCGTGCAAGGCGTGG
TTTATTCCTTCTTTGGTGCATGATACGTATGAGTTTTCTTCTATGATAACGGGAGAATCAAATGAGCAACAAACTCAAAA
TTCAGGCACTCAGCAGGATAAGAAAAAACCAGAACCGCTAATTCCTCCTGTCCTTATCTTTGATACAAAAAAAAGAATGG
ATGACTATGCGGCAGAGGATATGCGATATGGTGATATTACTGAGGATGTACTGAAGAAAAAGTTTCATCTTACAGATGTC
TCTGCACGAGTTAACCCTTATACGACAGTTAACCGCCAATCCAGTACTAAAATACTATTTGATGAGTTTCGTGATTTGTC
AGATGCATTTTCATTTTACGGGGAATATAAGGGCGTGATACGTAAGATGATCACGCATATGGAGAAAAATACAGGTAAAC
CGTACAGTGACCCATTGTTGGATAAAGCCCTAAGAGAACAGATATTGAATGATAAGTCACCTAACAGCTCTCTTTTAAAA
ATCAAAGAAATTTTGCGAGATTATATTGATTGGCAAGAGCAAATTTATCCTCTCGACAATGAAAATGAATTACGGAAAAA
TATTGCAACATCAGTATTGCCTAAATTTAATGACTACAGTGATAGAATAAATGGCTTAGTCATTACTGTTCATGATACAT
GGTCAACACATATTACATTGCAGTCATTAAAGATAACAGGGGATACCTACACCGCCACAATAAAATATCGAGTGCAAGAT
CACTTTGGATTAGATAATGATGATATTTCCAACCATATATATCGGCAGCTTCGTATATTTAGGATTTGGTTTGTTCTCCA
GCGCGGAGAAATGTATAGCTATCGTCCGTTTATTACAGAAATGAATACAGTAGTAACGATAGAGGGGAAACGTTAA