Detailed information of component protein


Summary

Component ID T6CP002232
Component protein type TssE
T6SS ID (Type) T6SS00224 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (151 a.a.); Nucleotide sequence (453 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS13730
Coordinate (Strand) 2809545..2809997 (-)
NCBI ID WP_002211943.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
GPW_gp25PF04965.167.3e-0935..116
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-150MPDTSSPSLYEQLLGNFTGGLDLHQVSDENQVILSVLDNMQRILNCRAGTLSHLPDYGLPDMSKILQGLPGSAHSLLTTLSATLLKYEPRLKSLQVILLPQTTPGHLEYAIDAELKGLGLVRYGTAFMPEGRVLMRHLKQQHYLNQRESF


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9929--


  Protein sequence: 151 a.a.    

>T6CP002232 NC_009708:c2809997-2809545 [Yersinia pseudotuberculosis IP 31758] [TssE]
MPDTSSPSLYEQLLGNFTGGLDLHQVSDENQVILSVLDNMQRILNCRAGTLSHLPDYGLPDMSKILQGLPGSAHSLLTTL
SATLLKYEPRLKSLQVILLPQTTPGHLEYAIDAELKGLGLVRYGTAFMPEGRVLMRHLKQQHYLNQRESF*

  Nucleotide sequence: 453 bp    

>T6CP002232 NC_009708:c2809997-2809545 [Yersinia pseudotuberculosis IP 31758] [TssE]
ATGCCGGACACCTCCTCGCCATCGTTGTATGAGCAATTGTTGGGCAATTTCACCGGCGGGCTTGACCTGCATCAGGTCAG
TGACGAAAACCAGGTCATTCTCTCGGTGCTGGACAATATGCAACGCATTCTTAATTGTCGGGCCGGAACACTCAGTCATC
TGCCCGATTATGGCCTGCCGGACATGAGTAAAATTCTGCAGGGGTTGCCGGGCAGCGCGCATTCGCTGCTGACCACGCTG
TCCGCCACCTTGCTGAAATACGAGCCGCGTCTGAAAAGTTTGCAGGTGATTCTGTTGCCACAGACCACACCCGGTCATCT
GGAATACGCCATTGATGCGGAGCTGAAAGGGCTGGGACTGGTGCGCTATGGCACGGCGTTTATGCCGGAGGGCAGGGTGT
TGATGCGCCACCTTAAACAACAACACTACCTCAATCAGCGGGAGTCATTTTGA