Detailed information of component protein


Summary

Component ID T6CP002237
Component protein type TssI
T6SS ID (Type) T6SS00224 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (783 a.a.); Nucleotide sequence (2349 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS13815
Coordinate (Strand) 2833254..2835602 (-)
NCBI ID WP_012105357.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4.6e-62 34..355
DUF2345 PF10106.11 1.7e-49 611..751
T6SS_Vgr PF13296.8 1.8e-34 492..592
Phage_base_V PF04717.14 1.6e-09 406..472
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-782 MNTFLPTLRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMQDASLTLAAPVAEAFGVTVQQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPRREQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYPSGLTLQAVPPSGLHDSGTESVWDLSSAHQVVEKSVSTGDYNYRTATADLTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVANAAALAPGQELNVTGNDVPAQFGKGVIITRITSHARRDRSYEVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTANDTYGHIDKDGRYRVNLMFDRDSWESGYESLWVRQARPYAGDTYGLHLPLLAGTEVAIAFEDGNPDRPYIASVLHDSAHGDHVTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAEKGIFISADGQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASPANLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQMSTSDNLIATAGKNTDVSVAKNFFIGVGNTLSIFVRKLGMKLIANQGSITVQAQNDLMELLARKAITITSTEDEIKITAKKRITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRLDKAKLPTEFPALAAKTEDPIKRWLFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9892 - -


  Protein sequence: 783 a.a.    

>T6CP002237 NC_009708:c2835602-2833254 [Yersinia pseudotuberculosis IP 31758] [TssI]
MNTFLPTLRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMQDASLTLAAPVAEAFGVTV
QQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPR
REQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYPSGLTLQAVPPSGLHDSGTESVWDLSSAHQVV
EKSVSTGDYNYRTATADLTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVAN
AAALAPGQELNVTGNDVPAQFGKGVIITRITSHARRDRSYEVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTAND
TYGHIDKDGRYRVNLMFDRDSWESGYESLWVRQARPYAGDTYGLHLPLLAGTEVAIAFEDGNPDRPYIASVLHDSAHGDH
VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAEKGIFISAD
GQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASPANLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQM
STSDNLIATAGKNTDVSVAKNFFIGVGNTLSIFVRKLGMKLIANQGSITVQAQNDLMELLARKAITITSTEDEIKITAKK
RITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRLDKAKLPTEFPALAAKTEDPIKRWLFS*

  Nucleotide sequence: 2349 bp    

>T6CP002237 NC_009708:c2835602-2833254 [Yersinia pseudotuberculosis IP 31758] [TssI]
ATGAATACCTTTCTCCCGACTCTTCGGTTTGACCATAGCCACCACAAACTGGTGGTCCGCGACAGCACCGCCGCCGTTGA
TGTGCTGGGCTTTGAAGGCCATGAAAGCCTGAGCCAGCCGTTCTGTTACGACATCCAATTCACCAGCGCCGACAAGGCGA
TTGACCCGGCCACCATGTTGATGCAGGACGCGTCACTGACATTGGCGGCCCCGGTGGCTGAAGCCTTTGGTGTGACGGTT
CAGCAGACCCAACGGGTGATCCAAGGGGTGGTGACCGGGTTTAAACGTCTGTCGGCCTCGAAAGAGGAATGCCGCTACGA
ACTGAGCCTGCAACCGCGCCTGGCCTTGCTGTCGCGCAGCCATCAGAACGGGATATATCAGGACATGTCGGTGCCGCAGA
TTGTGGAAAAAATTCTGCGTGAGCGCCATGATATGCGCGGTCAGGATTTTGTCTTCACCCTGGCCCGCGAGTACCCGCGC
CGCGAGCAGGTGATGCAGTACGGCGAAGATGACCTGACCTTTATCCGCCGCCTGCTGGCGGAAGTGGGGATCTGGTTTCG
TTTTACCGCCGATCCCAAACTCAATATTGATGTGGTGGAGTTTTACGACGACCAGCGCTTTTACCCGTCAGGGCTGACGC
TACAGGCAGTGCCCCCTTCGGGCCTGCACGACAGCGGGACGGAGTCGGTCTGGGATTTGTCCAGTGCCCATCAGGTGGTG
GAAAAATCGGTCAGTACCGGCGATTACAACTACCGCACCGCCACTGCCGACCTGACCGCCGGGGCCGACATCACGCGCGG
CGATACCACCACCTACGGCGAAGCCTATCATTACGCCGATAACTATCTGACCGCAGGCAGCGAAGGGCGCGAGCCGGAAA
GTGAAAGTGGGGCCTTTTATGCCCGTCTGCGCCATGAACGTTACCTCAATAATCAGGCGCGCTTCGCCGGGGTGGCCAAT
GCGGCGGCACTGGCACCGGGTCAGGAACTGAACGTCACCGGCAACGACGTGCCAGCACAGTTTGGTAAAGGGGTGATAAT
CACCCGCATCACCAGCCATGCCCGCCGCGACCGCAGCTATGAAGTACATTTTGAAGCCATTCCTTACTCCGAGGATTATT
GCTTCCGTCCGGCGCTGATCCGCAAGCCGACCATGGCCGGGACCTTGCCGGCGCGGGTGACCAGTACCACTGCTAACGAC
ACTTATGGTCATATCGACAAAGACGGGCGCTACCGTGTCAACCTGATGTTCGACCGTGACAGTTGGGAGTCGGGTTACGA
AAGCCTTTGGGTTCGTCAGGCCCGCCCGTATGCGGGTGACACCTACGGCCTGCACCTGCCGCTGCTGGCGGGCACCGAAG
TGGCGATTGCGTTTGAAGATGGCAATCCGGACCGGCCGTATATTGCCTCTGTGTTGCACGACTCGGCGCACGGCGACCAT
GTCACCATCAGTAATTACAAACGTAACGTACTGCGTACTCCGTCGAATAACAAACTGCGCCTTGAAGATGAACGGGGTAA
AGAGCACATCAAGCTCAGCACCGAATACGGCGGCAAAAGCCAGTTGAATCTGGGGCATCTGGTCGATAACGAGAAACAGC
CTCGGGGTGAGGGTTTTGAGCTGCGCACCGACAGTTTTGGTGCCTTGCGGGCAGAAAAAGGGATTTTCATCAGCGCTGAC
GGCCAGGCGAAGGCACAGGGGCAGGTGCTGGAGATGCAACCGGCTATCAGCCTGTTGAAAAGTGCGCAGGAACAGATGGA
GGCCATCTCCGCGGATGCACAAACCGCCACCGCCAGTCCGGCCAACCTACAGGTACAAATCAGTCTGTTGCAGCAAAACC
TCACTGAACTGAAACAAGCTGTCCTGTTACTGAGTGCGCCAAAGGGGATCGCGTTGAGCAGCGGGGAGCATCTGCAAATG
AGTACCAGCGATAACCTGATTGCCACCGCAGGTAAAAATACCGACGTCAGCGTCGCGAAAAACTTCTTTATCGGCGTAGG
CAATACCCTAAGTATCTTCGTCAGAAAGCTGGGGATGAAACTAATAGCCAATCAGGGGTCGATAACAGTCCAGGCCCAGA
ATGATCTAATGGAGTTATTGGCGCGTAAAGCGATCACGATCACCAGCACCGAGGATGAGATAAAAATCACCGCCAAGAAG
AGGATCACGCTGAATGCGGGAGGCAGTTATATCACGCTGGATGAGAATCGGATCGAGTCAGGAACGGCGGGGGAATATTT
GACCAAAGCAGGGTATTACGGGCGGTTAGATAAGGCCAAGCTCCCAACTGAATTTCCAGCCTTAGCCGCTAAAACTGAAG
ACCCCATTAAACGTTGGCTATTCTCTTAA