Detailed information of component protein
Summary
| Component ID | T6CP002234 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS00224  (Type i2) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (362 a.a.); Nucleotide sequence (1086 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS13740 |
| Coordinate (Strand) | 2810553..2811638 (-) |
| NCBI ID | WP_012105343.1 |
| RefSeq | NC_009708 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 1.9e-72 | 22..319 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-361 | MGRESSVPPSRLITRLKRDIGQINFYRFCQLLEQQPGTLPLGSTNSPADDPVRFRPHPGMGFPVSELKALENDPLHPEAPLTARTTFMGLYGVDSPLPTAYIDDITQQREGHEALEGFLDIFNHRFMTQFYRIWRKYSYPATFESGGTDNTSQSLLGLIGMGIPGSQQHFATPTSRFLALLGVMRQPGRTAEGVQALARLLAPFTEADVTPHCLRTVRLISPMAFADEGANWLDGYTVLGDEAIDANSQLLISLRTADRDEAANWLPDGPLYTDFLVLLRVYLGWRYRACIQLTVATRLLPALVLDETPIRLGLTGVLGLDDATLSDDIPEYFTVALGHYRGLAPQQHQEGNRRVNYRLEK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9853 | - | - |
Protein sequence: 362 a.a.
>T6CP002234 NC_009708:c2811638-2810553 [Yersinia pseudotuberculosis IP 31758] [TssG]
MGRESSVPPSRLITRLKRDIGQINFYRFCQLLEQQPGTLPLGSTNSPADDPVRFRPHPGMGFPVSELKALENDPLHPEAP
LTARTTFMGLYGVDSPLPTAYIDDITQQREGHEALEGFLDIFNHRFMTQFYRIWRKYSYPATFESGGTDNTSQSLLGLIG
MGIPGSQQHFATPTSRFLALLGVMRQPGRTAEGVQALARLLAPFTEADVTPHCLRTVRLISPMAFADEGANWLDGYTVLG
DEAIDANSQLLISLRTADRDEAANWLPDGPLYTDFLVLLRVYLGWRYRACIQLTVATRLLPALVLDETPIRLGLTGVLGL
DDATLSDDIPEYFTVALGHYRGLAPQQHQEGNRRVNYRLEK*
MGRESSVPPSRLITRLKRDIGQINFYRFCQLLEQQPGTLPLGSTNSPADDPVRFRPHPGMGFPVSELKALENDPLHPEAP
LTARTTFMGLYGVDSPLPTAYIDDITQQREGHEALEGFLDIFNHRFMTQFYRIWRKYSYPATFESGGTDNTSQSLLGLIG
MGIPGSQQHFATPTSRFLALLGVMRQPGRTAEGVQALARLLAPFTEADVTPHCLRTVRLISPMAFADEGANWLDGYTVLG
DEAIDANSQLLISLRTADRDEAANWLPDGPLYTDFLVLLRVYLGWRYRACIQLTVATRLLPALVLDETPIRLGLTGVLGL
DDATLSDDIPEYFTVALGHYRGLAPQQHQEGNRRVNYRLEK*
Nucleotide sequence: 1086 bp
>T6CP002234 NC_009708:c2811638-2810553 [Yersinia pseudotuberculosis IP 31758] [TssG]
ATGGGAAGAGAATCATCAGTCCCGCCTTCCCGGCTAATCACCCGGCTTAAGCGGGATATCGGCCAGATCAATTTTTACCG
TTTCTGTCAGTTGCTGGAGCAACAACCGGGAACCTTGCCGCTCGGCAGTACCAACAGCCCGGCGGATGATCCGGTGCGTT
TTCGTCCGCATCCCGGCATGGGTTTTCCGGTCAGTGAACTGAAGGCGCTGGAAAACGACCCGCTGCATCCGGAAGCCCCG
TTGACCGCGCGCACCACCTTTATGGGGTTGTACGGTGTGGATTCGCCTTTGCCGACGGCCTATATCGACGATATCACCCA
GCAGCGCGAAGGGCATGAGGCGCTGGAAGGGTTCCTCGATATTTTCAACCACCGTTTTATGACGCAGTTTTATCGCATCT
GGCGTAAGTACTCCTATCCGGCCACTTTTGAGTCGGGCGGCACAGACAATACCTCTCAGAGCCTGTTGGGGCTGATAGGC
ATGGGTATTCCTGGCTCACAGCAGCATTTTGCCACCCCAACATCGCGCTTTCTGGCCTTGCTGGGGGTGATGCGACAACC
GGGGCGCACTGCCGAAGGGGTACAGGCGCTGGCCCGGCTGCTGGCCCCGTTTACCGAGGCGGATGTCACGCCCCATTGCC
TGCGCACGGTGCGCCTGATTTCTCCGATGGCGTTTGCCGATGAAGGGGCCAACTGGCTGGACGGCTACACCGTGCTGGGT
GATGAGGCCATTGATGCCAACAGTCAGTTGCTGATTTCGCTGCGCACGGCAGACCGCGACGAGGCCGCTAACTGGTTACC
GGATGGCCCGCTGTATACCGATTTTCTGGTGCTGTTGCGGGTCTATCTGGGCTGGCGTTACCGGGCCTGTATCCAACTGA
CGGTCGCCACCCGGTTGCTGCCGGCGTTGGTGTTGGATGAGACACCGATAAGGCTGGGATTAACCGGCGTGCTGGGGCTG
GATGACGCGACGCTGTCAGACGATATACCTGAATATTTTACCGTGGCGCTGGGCCACTACCGTGGGCTGGCTCCACAGCA
ACATCAAGAAGGAAACCGACGTGTTAACTACCGTTTGGAAAAATAA
ATGGGAAGAGAATCATCAGTCCCGCCTTCCCGGCTAATCACCCGGCTTAAGCGGGATATCGGCCAGATCAATTTTTACCG
TTTCTGTCAGTTGCTGGAGCAACAACCGGGAACCTTGCCGCTCGGCAGTACCAACAGCCCGGCGGATGATCCGGTGCGTT
TTCGTCCGCATCCCGGCATGGGTTTTCCGGTCAGTGAACTGAAGGCGCTGGAAAACGACCCGCTGCATCCGGAAGCCCCG
TTGACCGCGCGCACCACCTTTATGGGGTTGTACGGTGTGGATTCGCCTTTGCCGACGGCCTATATCGACGATATCACCCA
GCAGCGCGAAGGGCATGAGGCGCTGGAAGGGTTCCTCGATATTTTCAACCACCGTTTTATGACGCAGTTTTATCGCATCT
GGCGTAAGTACTCCTATCCGGCCACTTTTGAGTCGGGCGGCACAGACAATACCTCTCAGAGCCTGTTGGGGCTGATAGGC
ATGGGTATTCCTGGCTCACAGCAGCATTTTGCCACCCCAACATCGCGCTTTCTGGCCTTGCTGGGGGTGATGCGACAACC
GGGGCGCACTGCCGAAGGGGTACAGGCGCTGGCCCGGCTGCTGGCCCCGTTTACCGAGGCGGATGTCACGCCCCATTGCC
TGCGCACGGTGCGCCTGATTTCTCCGATGGCGTTTGCCGATGAAGGGGCCAACTGGCTGGACGGCTACACCGTGCTGGGT
GATGAGGCCATTGATGCCAACAGTCAGTTGCTGATTTCGCTGCGCACGGCAGACCGCGACGAGGCCGCTAACTGGTTACC
GGATGGCCCGCTGTATACCGATTTTCTGGTGCTGTTGCGGGTCTATCTGGGCTGGCGTTACCGGGCCTGTATCCAACTGA
CGGTCGCCACCCGGTTGCTGCCGGCGTTGGTGTTGGATGAGACACCGATAAGGCTGGGATTAACCGGCGTGCTGGGGCTG
GATGACGCGACGCTGTCAGACGATATACCTGAATATTTTACCGTGGCGCTGGGCCACTACCGTGGGCTGGCTCCACAGCA
ACATCAAGAAGGAAACCGACGTGTTAACTACCGTTTGGAAAAATAA