Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00222  |
| T6SS type | Type i2 |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon (RefSeq) | chromosome (NC_009708) |
| Location | 932854..967215 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPSIP31758_RS05225 | 928475..929359 | + | 885 | WP_012104621.1 | ParB N-terminal domain-containing protein | ||
| YPSIP31758_RS24560 | 929701..929950 | - | 250 | pseudogene | hypothetical protein | ||
| YPSIP31758_RS05235 | 930649..931306 | - | 658 | pseudogene | DUF533 domain-containing protein | ||
| YPSIP31758_RS05240 | 931614..931844 | - | 231 | WP_041175845.1 | PerC family transcriptional regulator | ||
| T6CP002209 | TssB | YPSIP31758_RS05245 (tssB) | 932854..933354 | + | 501 | WP_012104625.1 | type VI secretion system contractile sheath small subunit |
| T6CP002210 | TssC | YPSIP31758_RS05250 (tssC) | 933399..934952 | + | 1554 | WP_012104626.1 | type VI secretion system contractile sheath large subunit |
| T6CP002211 | TssK | YPSIP31758_RS05255 (tssK) | 935078..936430 | + | 1353 | WP_012104627.1 | type VI secretion system baseplate subunit TssK |
| T6CP009303 | TssL | YPSIP31758_RS05260 (tssL) | 936427..937113 | + | 687 | WP_012104628.1 | type VI secretion system protein TssL, short form |
| T6CP011607 | TagL | YPSIP31758_RS05265 | 937113..938834 | + | 1722 | WP_012104629.1 | OmpA family protein |
| T6CP009357 | TssD | YPSIP31758_RS05270 | 938848..939339 | + | 492 | WP_004877984.1 | Hcp family type VI secretion system effector |
| YPSIP31758_RS05275 (tssH) | 939886..942534 | + | 2649 | pseudogene | type VI secretion system ATPase TssH | ||
| T6CP002212 | TssI | YPSIP31758_RS05280 | 942531..945029 | + | 2499 | WP_012104631.1 | type VI secretion system tip protein VgrG |
| YPSIP31758_RS05285 | 945147..946418 | + | 1272 | WP_012104632.1 | hypothetical protein | ||
| YPSIP31758_RS05290 | 946422..946817 | + | 396 | WP_032467135.1 | hypothetical protein | ||
| T6CP002213 | TssI | YPSIP31758_RS05295 | 947132..949834 | + | 2703 | WP_012104633.1 | type VI secretion system tip protein VgrG |
| YPSIP31758_RS05300 | 949837..950253 | + | 417 | WP_011192084.1 | DUF4431 domain-containing protein | ||
| YPSIP31758_RS05305 | 950262..952009 | + | 1748 | pseudogene | TIGR02594 family protein | ||
| YPSIP31758_RS05310 | 952014..952532 | + | 519 | WP_012104636.1 | hypothetical protein | ||
| YPSIP31758_RS05315 | 953312..954544 | + | 1233 | WP_012104638.1 | hypothetical protein | ||
| T6CP002214 | TssM | YPSIP31758_RS05320 | 954541..957963 | + | 3423 | WP_012104639.1 | type VI secretion system membrane subunit |
| T6CP009358 | TssA | YPSIP31758_RS05325 (tssA) | 958005..959609 | + | 1605 | WP_012104640.1 | type VI secretion system protein TssA |
| T6CP011606 | PAAR | YPSIP31758_RS05330 | 959627..960685 | + | 1059 | WP_012104641.1 | PAAR domain-containing protein |
| YPSIP31758_RS05335 | 960700..961155 | + | 456 | WP_002211939.1 | hypothetical protein | ||
| T6CP002215 | TssF | YPSIP31758_RS05340 (tssF) | 961400..963163 | + | 1764 | WP_012104643.1 | type VI secretion system baseplate subunit TssF |
| T6CP002216 | TssG | YPSIP31758_RS05345 (tssG) | 963127..964212 | + | 1086 | WP_012104644.1 | type VI secretion system baseplate subunit TssG |
| T6CP002217 | TssJ | YPSIP31758_RS05350 (tssJ) | 964187..964768 | + | 582 | WP_012104645.1 | type VI secretion system lipoprotein TssJ |
| T6CP002218 | TssE | YPSIP31758_RS05355 (tssE) | 964768..965217 | + | 450 | WP_012104646.1 | type VI secretion system baseplate subunit TssE |
| YPSIP31758_RS24290 | 965286..965702 | + | 417 | WP_049756382.1 | DUF1283 domain-containing protein | ||
| T6CP009359 | TssA | YPSIP31758_RS05365 | 965818..967215 | + | 1398 | WP_012104648.1 | type VI secretion system ImpA and VasL domain-containing protein |
| YPSIP31758_RS05370 | 967349..967942 | + | 594 | WP_113773016.1 | hypothetical protein | ||
| YPSIP31758_RS05375 | 968006..969856 | + | 1851 | WP_012104650.1 | NERD domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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