Detailed information of component protein
Summary
Component ID | T6CP009359 |
Component protein type | TssA |
T6SS ID (Type) | T6SS00222 (Type i2) |
Strain | Yersinia pseudotuberculosis IP 31758 |
Replicon | chromosome |
Sequence | Protein sequence (466 a.a.); Nucleotide sequence (1398 bp) |
Reference | - |
External database links
Locus tag (Gene) | YPSIP31758_RS05365 |
Coordinate (Strand) | 965818..967215 (+) |
NCBI ID | WP_012104648.1 |
RefSeq | NC_009708 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VasL | PF12486.10 | 2.3e-44 | 312..458 |
ImpA_N | PF06812.14 | 2.6e-20 | 10..112 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-465 | MTHLPERHLKTGGDPRHFAEFSALRNEIGKLHHPARPDVDWTRVEQLCLALFRQNGVELQTTVDFTLARTHVAGLAGLCEGLELLAGLLSHQWSTLWPPQTHARVELLAWLSDRLQQVWRTMTLCYGDLALVYRAEQALEQLCTQLQTLELKHLSKLDGVRLMLHNAALRLESAEAGADTPDRLTVPIRHAELSEPQPTFVSATASVPLVYIVNEPAPPSVQVALAPPEPPPPPRWKVGHGFIAGLLLMAVLMTGGFAIWQSLSSDPLREALLANASPLPTLLTAKSINELQKQTSDAELGRLAEPVLQASGSQLEQLAILPPLWAQIRGDALLSQAQQLWPASQDVKRLSTLWQQQREAGAAPLGELKHYALAQERLRQLADRLNGLDEKKGRYMTVSELKTVVFAIQQPLAKTLPLEELLRQYQAQSESGQTPSSALRQQIDSRFTQLLNRYALLTLPETASP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9955 | - | - |
Protein sequence: 466 a.a.
>T6CP009359 NC_009708:965818-967215 [Yersinia pseudotuberculosis IP 31758] [TssA]
MTHLPERHLKTGGDPRHFAEFSALRNEIGKLHHPARPDVDWTRVEQLCLALFRQNGVELQTTVDFTLARTHVAGLAGLCE
GLELLAGLLSHQWSTLWPPQTHARVELLAWLSDRLQQVWRTMTLCYGDLALVYRAEQALEQLCTQLQTLELKHLSKLDGV
RLMLHNAALRLESAEAGADTPDRLTVPIRHAELSEPQPTFVSATASVPLVYIVNEPAPPSVQVALAPPEPPPPPRWKVGH
GFIAGLLLMAVLMTGGFAIWQSLSSDPLREALLANASPLPTLLTAKSINELQKQTSDAELGRLAEPVLQASGSQLEQLAI
LPPLWAQIRGDALLSQAQQLWPASQDVKRLSTLWQQQREAGAAPLGELKHYALAQERLRQLADRLNGLDEKKGRYMTVSE
LKTVVFAIQQPLAKTLPLEELLRQYQAQSESGQTPSSALRQQIDSRFTQLLNRYALLTLPETASP*
MTHLPERHLKTGGDPRHFAEFSALRNEIGKLHHPARPDVDWTRVEQLCLALFRQNGVELQTTVDFTLARTHVAGLAGLCE
GLELLAGLLSHQWSTLWPPQTHARVELLAWLSDRLQQVWRTMTLCYGDLALVYRAEQALEQLCTQLQTLELKHLSKLDGV
RLMLHNAALRLESAEAGADTPDRLTVPIRHAELSEPQPTFVSATASVPLVYIVNEPAPPSVQVALAPPEPPPPPRWKVGH
GFIAGLLLMAVLMTGGFAIWQSLSSDPLREALLANASPLPTLLTAKSINELQKQTSDAELGRLAEPVLQASGSQLEQLAI
LPPLWAQIRGDALLSQAQQLWPASQDVKRLSTLWQQQREAGAAPLGELKHYALAQERLRQLADRLNGLDEKKGRYMTVSE
LKTVVFAIQQPLAKTLPLEELLRQYQAQSESGQTPSSALRQQIDSRFTQLLNRYALLTLPETASP*
Nucleotide sequence: 1398 bp
>T6CP009359 NC_009708:965818-967215 [Yersinia pseudotuberculosis IP 31758] [TssA]
ATGACACACTTACCTGAACGCCACCTGAAAACCGGCGGCGACCCCCGCCATTTTGCTGAATTCAGCGCCTTACGTAACGA
AATCGGTAAATTACACCATCCCGCCCGCCCGGATGTTGACTGGACGAGGGTCGAGCAGCTTTGTCTCGCACTGTTTCGCC
AGAATGGCGTTGAGCTACAGACCACGGTTGATTTTACGCTGGCTCGGACGCACGTTGCTGGGCTGGCCGGGTTATGTGAG
GGGCTGGAACTGCTGGCGGGATTGCTCTCTCATCAATGGAGCACCTTGTGGCCGCCGCAAACCCATGCGCGGGTGGAGTT
ACTGGCTTGGCTGAGTGACCGATTGCAACAGGTCTGGCGTACCATGACCCTGTGCTACGGTGATCTGGCGCTGGTTTACC
GTGCTGAGCAGGCGCTGGAACAACTCTGCACGCAACTGCAAACGTTGGAACTCAAGCATCTGAGTAAACTGGACGGTGTT
CGCCTCATGTTGCATAACGCCGCATTGCGGCTAGAGAGTGCCGAAGCGGGCGCTGATACACCCGACCGATTGACTGTGCC
AATACGGCACGCCGAGCTCTCGGAACCACAACCCACCTTCGTGTCGGCCACAGCCAGTGTTCCGCTGGTCTATATTGTCA
ACGAACCGGCTCCGCCGAGTGTACAGGTGGCTTTAGCCCCACCTGAGCCGCCACCCCCTCCGCGCTGGAAAGTCGGGCAC
GGTTTTATTGCCGGGTTATTGTTGATGGCGGTGCTGATGACGGGCGGTTTTGCTATCTGGCAGTCACTCTCATCCGATCC
GTTGCGGGAGGCATTACTCGCCAATGCCAGCCCTTTACCCACACTGCTGACGGCTAAATCAATCAATGAACTGCAAAAGC
AGACCTCAGACGCCGAACTGGGACGTTTGGCTGAACCCGTGCTGCAAGCCAGTGGCTCACAGTTAGAACAATTGGCGATA
TTGCCACCGTTATGGGCGCAAATACGGGGTGATGCACTGTTATCACAAGCACAACAATTGTGGCCCGCCAGCCAAGACGT
TAAGCGTTTGAGCACATTGTGGCAGCAACAACGAGAGGCTGGAGCCGCCCCGCTGGGGGAGTTGAAACACTATGCACTGG
CGCAAGAGCGCCTACGGCAACTGGCCGATCGCCTAAATGGATTGGATGAGAAAAAGGGGCGCTATATGACGGTCTCGGAG
CTGAAAACGGTGGTCTTTGCGATACAACAACCGCTGGCAAAAACCTTACCGCTGGAAGAGTTGCTGCGGCAGTATCAGGC
ACAGTCCGAGTCAGGGCAAACTCCATCTTCAGCACTGCGCCAACAGATTGACAGCCGGTTTACTCAACTGCTGAACCGGT
ATGCGTTACTCACGTTGCCCGAAACGGCATCGCCGTAG
ATGACACACTTACCTGAACGCCACCTGAAAACCGGCGGCGACCCCCGCCATTTTGCTGAATTCAGCGCCTTACGTAACGA
AATCGGTAAATTACACCATCCCGCCCGCCCGGATGTTGACTGGACGAGGGTCGAGCAGCTTTGTCTCGCACTGTTTCGCC
AGAATGGCGTTGAGCTACAGACCACGGTTGATTTTACGCTGGCTCGGACGCACGTTGCTGGGCTGGCCGGGTTATGTGAG
GGGCTGGAACTGCTGGCGGGATTGCTCTCTCATCAATGGAGCACCTTGTGGCCGCCGCAAACCCATGCGCGGGTGGAGTT
ACTGGCTTGGCTGAGTGACCGATTGCAACAGGTCTGGCGTACCATGACCCTGTGCTACGGTGATCTGGCGCTGGTTTACC
GTGCTGAGCAGGCGCTGGAACAACTCTGCACGCAACTGCAAACGTTGGAACTCAAGCATCTGAGTAAACTGGACGGTGTT
CGCCTCATGTTGCATAACGCCGCATTGCGGCTAGAGAGTGCCGAAGCGGGCGCTGATACACCCGACCGATTGACTGTGCC
AATACGGCACGCCGAGCTCTCGGAACCACAACCCACCTTCGTGTCGGCCACAGCCAGTGTTCCGCTGGTCTATATTGTCA
ACGAACCGGCTCCGCCGAGTGTACAGGTGGCTTTAGCCCCACCTGAGCCGCCACCCCCTCCGCGCTGGAAAGTCGGGCAC
GGTTTTATTGCCGGGTTATTGTTGATGGCGGTGCTGATGACGGGCGGTTTTGCTATCTGGCAGTCACTCTCATCCGATCC
GTTGCGGGAGGCATTACTCGCCAATGCCAGCCCTTTACCCACACTGCTGACGGCTAAATCAATCAATGAACTGCAAAAGC
AGACCTCAGACGCCGAACTGGGACGTTTGGCTGAACCCGTGCTGCAAGCCAGTGGCTCACAGTTAGAACAATTGGCGATA
TTGCCACCGTTATGGGCGCAAATACGGGGTGATGCACTGTTATCACAAGCACAACAATTGTGGCCCGCCAGCCAAGACGT
TAAGCGTTTGAGCACATTGTGGCAGCAACAACGAGAGGCTGGAGCCGCCCCGCTGGGGGAGTTGAAACACTATGCACTGG
CGCAAGAGCGCCTACGGCAACTGGCCGATCGCCTAAATGGATTGGATGAGAAAAAGGGGCGCTATATGACGGTCTCGGAG
CTGAAAACGGTGGTCTTTGCGATACAACAACCGCTGGCAAAAACCTTACCGCTGGAAGAGTTGCTGCGGCAGTATCAGGC
ACAGTCCGAGTCAGGGCAAACTCCATCTTCAGCACTGCGCCAACAGATTGACAGCCGGTTTACTCAACTGCTGAACCGGT
ATGCGTTACTCACGTTGCCCGAAACGGCATCGCCGTAG