Detailed information of component protein


Summary

Component ID T6CP009359
Component protein type TssA
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (466 a.a.); Nucleotide sequence (1398 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05365
Coordinate (Strand) 965818..967215 (+)
NCBI ID WP_012104648.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 2.3e-44 312..458
ImpA_N PF06812.14 2.6e-20 10..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-465 MTHLPERHLKTGGDPRHFAEFSALRNEIGKLHHPARPDVDWTRVEQLCLALFRQNGVELQTTVDFTLARTHVAGLAGLCEGLELLAGLLSHQWSTLWPPQTHARVELLAWLSDRLQQVWRTMTLCYGDLALVYRAEQALEQLCTQLQTLELKHLSKLDGVRLMLHNAALRLESAEAGADTPDRLTVPIRHAELSEPQPTFVSATASVPLVYIVNEPAPPSVQVALAPPEPPPPPRWKVGHGFIAGLLLMAVLMTGGFAIWQSLSSDPLREALLANASPLPTLLTAKSINELQKQTSDAELGRLAEPVLQASGSQLEQLAILPPLWAQIRGDALLSQAQQLWPASQDVKRLSTLWQQQREAGAAPLGELKHYALAQERLRQLADRLNGLDEKKGRYMTVSELKTVVFAIQQPLAKTLPLEELLRQYQAQSESGQTPSSALRQQIDSRFTQLLNRYALLTLPETASP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 466 a.a.    

>T6CP009359 NC_009708:965818-967215 [Yersinia pseudotuberculosis IP 31758] [TssA]
MTHLPERHLKTGGDPRHFAEFSALRNEIGKLHHPARPDVDWTRVEQLCLALFRQNGVELQTTVDFTLARTHVAGLAGLCE
GLELLAGLLSHQWSTLWPPQTHARVELLAWLSDRLQQVWRTMTLCYGDLALVYRAEQALEQLCTQLQTLELKHLSKLDGV
RLMLHNAALRLESAEAGADTPDRLTVPIRHAELSEPQPTFVSATASVPLVYIVNEPAPPSVQVALAPPEPPPPPRWKVGH
GFIAGLLLMAVLMTGGFAIWQSLSSDPLREALLANASPLPTLLTAKSINELQKQTSDAELGRLAEPVLQASGSQLEQLAI
LPPLWAQIRGDALLSQAQQLWPASQDVKRLSTLWQQQREAGAAPLGELKHYALAQERLRQLADRLNGLDEKKGRYMTVSE
LKTVVFAIQQPLAKTLPLEELLRQYQAQSESGQTPSSALRQQIDSRFTQLLNRYALLTLPETASP*

  Nucleotide sequence: 1398 bp    

>T6CP009359 NC_009708:965818-967215 [Yersinia pseudotuberculosis IP 31758] [TssA]
ATGACACACTTACCTGAACGCCACCTGAAAACCGGCGGCGACCCCCGCCATTTTGCTGAATTCAGCGCCTTACGTAACGA
AATCGGTAAATTACACCATCCCGCCCGCCCGGATGTTGACTGGACGAGGGTCGAGCAGCTTTGTCTCGCACTGTTTCGCC
AGAATGGCGTTGAGCTACAGACCACGGTTGATTTTACGCTGGCTCGGACGCACGTTGCTGGGCTGGCCGGGTTATGTGAG
GGGCTGGAACTGCTGGCGGGATTGCTCTCTCATCAATGGAGCACCTTGTGGCCGCCGCAAACCCATGCGCGGGTGGAGTT
ACTGGCTTGGCTGAGTGACCGATTGCAACAGGTCTGGCGTACCATGACCCTGTGCTACGGTGATCTGGCGCTGGTTTACC
GTGCTGAGCAGGCGCTGGAACAACTCTGCACGCAACTGCAAACGTTGGAACTCAAGCATCTGAGTAAACTGGACGGTGTT
CGCCTCATGTTGCATAACGCCGCATTGCGGCTAGAGAGTGCCGAAGCGGGCGCTGATACACCCGACCGATTGACTGTGCC
AATACGGCACGCCGAGCTCTCGGAACCACAACCCACCTTCGTGTCGGCCACAGCCAGTGTTCCGCTGGTCTATATTGTCA
ACGAACCGGCTCCGCCGAGTGTACAGGTGGCTTTAGCCCCACCTGAGCCGCCACCCCCTCCGCGCTGGAAAGTCGGGCAC
GGTTTTATTGCCGGGTTATTGTTGATGGCGGTGCTGATGACGGGCGGTTTTGCTATCTGGCAGTCACTCTCATCCGATCC
GTTGCGGGAGGCATTACTCGCCAATGCCAGCCCTTTACCCACACTGCTGACGGCTAAATCAATCAATGAACTGCAAAAGC
AGACCTCAGACGCCGAACTGGGACGTTTGGCTGAACCCGTGCTGCAAGCCAGTGGCTCACAGTTAGAACAATTGGCGATA
TTGCCACCGTTATGGGCGCAAATACGGGGTGATGCACTGTTATCACAAGCACAACAATTGTGGCCCGCCAGCCAAGACGT
TAAGCGTTTGAGCACATTGTGGCAGCAACAACGAGAGGCTGGAGCCGCCCCGCTGGGGGAGTTGAAACACTATGCACTGG
CGCAAGAGCGCCTACGGCAACTGGCCGATCGCCTAAATGGATTGGATGAGAAAAAGGGGCGCTATATGACGGTCTCGGAG
CTGAAAACGGTGGTCTTTGCGATACAACAACCGCTGGCAAAAACCTTACCGCTGGAAGAGTTGCTGCGGCAGTATCAGGC
ACAGTCCGAGTCAGGGCAAACTCCATCTTCAGCACTGCGCCAACAGATTGACAGCCGGTTTACTCAACTGCTGAACCGGT
ATGCGTTACTCACGTTGCCCGAAACGGCATCGCCGTAG