Detailed information of component protein


Summary

Component ID T6CP002211
Component protein type TssK
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (451 a.a.); Nucleotide sequence (1353 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05255
Coordinate (Strand) 935078..936430 (+)
NCBI ID WP_012104627.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5e-135 18..447
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-450 MKIERPLWTRGVLISPQQFQQQASWEAWTNECIAQMGVMHPWGVLQATFALDALAQGRLKAERLHLRFQDGVLVDTDCADVLPPTLTLAANLPPEATEATVMLAMPQLYANGGNCLQPDERGERPVRHRQAWRDVQNQYGDDKKQVAVMYHQLTLRLDSQENGDYQVCPVARLLRDAQGRWTLDPRFIPPMLSLQASAWCGEQLELLMVQLRARLQRLMGMRRESNARMADFAVADVSLFWLLNALNSAEPVLGNFQRYPQTHPERLYQELARLAGSLLTFSLEHEVTAIPVYQHEQLTRVFPPLFALLNILLEASLPSRVVAIELEHEPRINQWRATLRDPRLREGADFYLSVRSTLSSAQLQTQFPQLCKAGAPDDVGNVVNVALSGIPLRPLSHVPAAIPLRLENQYFSLDLSHPAAKQMMEAGACVFYVPGTLGEIQLELFAVLRA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9856 - -


  Protein sequence: 451 a.a.    

>T6CP002211 NC_009708:935078-936430 [Yersinia pseudotuberculosis IP 31758] [TssK]
MKIERPLWTRGVLISPQQFQQQASWEAWTNECIAQMGVMHPWGVLQATFALDALAQGRLKAERLHLRFQDGVLVDTDCAD
VLPPTLTLAANLPPEATEATVMLAMPQLYANGGNCLQPDERGERPVRHRQAWRDVQNQYGDDKKQVAVMYHQLTLRLDSQ
ENGDYQVCPVARLLRDAQGRWTLDPRFIPPMLSLQASAWCGEQLELLMVQLRARLQRLMGMRRESNARMADFAVADVSLF
WLLNALNSAEPVLGNFQRYPQTHPERLYQELARLAGSLLTFSLEHEVTAIPVYQHEQLTRVFPPLFALLNILLEASLPSR
VVAIELEHEPRINQWRATLRDPRLREGADFYLSVRSTLSSAQLQTQFPQLCKAGAPDDVGNVVNVALSGIPLRPLSHVPA
AIPLRLENQYFSLDLSHPAAKQMMEAGACVFYVPGTLGEIQLELFAVLRA*

  Nucleotide sequence: 1353 bp    

>T6CP002211 NC_009708:935078-936430 [Yersinia pseudotuberculosis IP 31758] [TssK]
ATGAAGATTGAACGTCCTCTGTGGACTCGCGGAGTTTTGATTTCCCCGCAGCAATTTCAACAACAGGCTTCTTGGGAGGC
CTGGACCAATGAATGCATCGCACAAATGGGCGTCATGCATCCCTGGGGAGTCCTTCAGGCCACTTTTGCATTAGATGCAT
TGGCTCAGGGCCGCCTGAAAGCAGAACGTTTGCACCTTCGTTTTCAGGACGGTGTCTTGGTGGACACCGATTGTGCTGAT
GTGTTGCCCCCGACACTGACACTGGCCGCGAATCTGCCGCCGGAGGCCACCGAAGCCACGGTTATGCTGGCGATGCCACA
ACTGTATGCCAACGGGGGTAACTGCCTGCAACCCGATGAGCGGGGCGAACGGCCCGTGCGCCATCGTCAGGCTTGGCGCG
ATGTACAAAATCAGTATGGGGATGATAAAAAGCAGGTCGCGGTGATGTACCACCAACTGACCCTGCGGTTGGACAGTCAG
GAAAACGGCGATTATCAGGTCTGTCCGGTGGCGCGTTTGCTGCGGGATGCGCAAGGTCGCTGGACACTGGATCCACGTTT
TATCCCGCCTATGCTGAGCTTGCAGGCCAGTGCCTGGTGTGGCGAACAGCTGGAATTACTGATGGTGCAGCTTCGGGCGC
GTTTACAGCGTCTGATGGGCATGCGCCGGGAAAGCAATGCACGAATGGCTGATTTTGCTGTCGCGGATGTGTCGTTATTC
TGGTTGCTCAATGCCCTTAACAGCGCTGAGCCGGTACTGGGGAATTTTCAGCGTTATCCGCAGACCCACCCGGAACGGCT
GTATCAGGAACTGGCAAGATTGGCGGGCAGCCTGCTGACGTTTTCCCTTGAGCATGAAGTGACGGCGATCCCGGTTTATC
AGCATGAACAGCTGACCCGCGTCTTCCCCCCTTTATTTGCTTTGCTGAATATTCTGCTGGAAGCCAGCCTCCCTTCACGG
GTGGTGGCGATTGAGCTGGAGCATGAACCGCGTATCAATCAGTGGCGAGCGACCCTGCGTGATCCTCGCTTGCGTGAGGG
GGCCGATTTCTATCTGTCGGTACGTTCCACGCTGTCTTCAGCGCAGTTACAAACCCAGTTCCCGCAGTTGTGTAAAGCCG
GAGCGCCGGATGATGTCGGTAATGTGGTGAATGTCGCACTGAGCGGGATCCCGTTGCGTCCACTGAGCCATGTCCCTGCC
GCCATCCCCTTGCGCCTGGAAAATCAGTATTTCTCCCTTGATCTCAGCCACCCTGCTGCGAAGCAGATGATGGAGGCAGG
GGCTTGTGTGTTCTATGTGCCTGGTACGCTGGGTGAGATCCAACTGGAATTGTTTGCGGTGTTGCGCGCATGA