Detailed information of component protein


Summary

Component ID T6CP002213
Component protein type TssI
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (901 a.a.); Nucleotide sequence (2703 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05295
Coordinate (Strand) 947132..949834 (+)
NCBI ID WP_012104633.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.4e-60 34..353
DUF2345 PF10106.11 1e-50 611..754
T6SS_Vgr PF13296.8 3.3e-34 492..592
Phage_base_V PF04717.14 2e-09 406..472
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-900 MNTSLPAIRFDHSHHKLVVRDSTAPVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMQDASLTLAAPVAEAFGVTVQQTQRVIHGVVTGFKRLSASKDECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPRREQVMQYGEDDLTFISRLLAEVGLWFRFTADPKLNIDVVEFYDDQRFYPPGLTLQAVPPSGMHDSGVESVWDLSSAHQVVEKSVSTGDYNYRTATADMTAGADITRGDTTTYGEAYHYADNYLIAGSEEREPESESGAFYARLRHERYLNNQARFSGVANAATLGPSQELKVTGNDVPAQFGKGVIIIRITSYARRDRSYEVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTANDTYGHIDKDGRYRVNLMFDRDSWEQGYESLWVRQARPYAGDTYGLHLPLLAGTEVAIAFEDGNPDRPYIAYVLHDSAHGDHVTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAEKGLFISADGQAKAQGQVLEMQPAISLLQGAQEQMDAISADAQTATASPADLQAQISLLQQNLSELKQAVVLLSAPKGIALSSGEHLQMSASENLIATAGKNTDISVAKNLFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTENEIKITAKKRITLNAGGSYITLDENRIESGTAGEYITKAGHYERQEKASLKSIIPAFPIIEPGEHSLRFAFYGDDNVIGSMGHLVGQPYNIRNSAGEVIASGVLDQSGRFPRVKTQEADELTLTLGEEKWTVEELIASTEDPIGEEFSEPDEYDVDSDPYFENIAQEQQSNRLPDTIINKFIGYVEEDI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9899 - -


  Protein sequence: 901 a.a.    

>T6CP002213 NC_009708:947132-949834 [Yersinia pseudotuberculosis IP 31758] [TssI]
MNTSLPAIRFDHSHHKLVVRDSTAPVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMQDASLTLAAPVAEAFGVTV
QQTQRVIHGVVTGFKRLSASKDECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPR
REQVMQYGEDDLTFISRLLAEVGLWFRFTADPKLNIDVVEFYDDQRFYPPGLTLQAVPPSGMHDSGVESVWDLSSAHQVV
EKSVSTGDYNYRTATADMTAGADITRGDTTTYGEAYHYADNYLIAGSEEREPESESGAFYARLRHERYLNNQARFSGVAN
AATLGPSQELKVTGNDVPAQFGKGVIIIRITSYARRDRSYEVHFEAIPYSEDYCFRPALIRKPTMAGTLPARVTSTTAND
TYGHIDKDGRYRVNLMFDRDSWEQGYESLWVRQARPYAGDTYGLHLPLLAGTEVAIAFEDGNPDRPYIAYVLHDSAHGDH
VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAEKGLFISAD
GQAKAQGQVLEMQPAISLLQGAQEQMDAISADAQTATASPADLQAQISLLQQNLSELKQAVVLLSAPKGIALSSGEHLQM
SASENLIATAGKNTDISVAKNLFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTENEIKITAKK
RITLNAGGSYITLDENRIESGTAGEYITKAGHYERQEKASLKSIIPAFPIIEPGEHSLRFAFYGDDNVIGSMGHLVGQPY
NIRNSAGEVIASGVLDQSGRFPRVKTQEADELTLTLGEEKWTVEELIASTEDPIGEEFSEPDEYDVDSDPYFENIAQEQQ
SNRLPDTIINKFIGYVEEDI*

  Nucleotide sequence: 2703 bp    

>T6CP002213 NC_009708:947132-949834 [Yersinia pseudotuberculosis IP 31758] [TssI]
ATGAATACCTCTCTCCCCGCTATTCGGTTTGACCATAGCCATCACAAACTGGTGGTCCGCGACAGCACGGCTCCCGTCGA
TGTGCTGGGTTTTGAAGGCCACGAAAGCTTAAGTCAGCCGTTCTGTTACGACATTCAATTTACCAGCGCAGACAAGGCGA
TTGACCCGGCCACGATGCTGATGCAGGACGCGTCACTGACATTGGCGGCCCCGGTGGCCGAAGCCTTTGGCGTGACGGTT
CAGCAGACCCAGCGGGTGATCCACGGCGTGGTGACCGGATTTAAACGCCTGTCTGCTTCAAAAGATGAATGCCGTTACGA
ACTGAGCCTGCAACCGCGTTTGGCTTTGTTGTCGCGTAGCCATCAGAACGGGATTTATCAGGACATGTCGGTGCCGCAGA
TTGTGGAAAAAATTCTGCGTGAGCGCCATGACATGCGCGGTCAGGATTTTGTCTTCACGCTGGCCCGCGAGTACCCCCGC
CGTGAGCAGGTGATGCAGTACGGCGAAGATGACCTGACCTTTATCAGCCGCCTGCTGGCGGAAGTGGGGCTCTGGTTTCG
TTTTACCGCTGACCCCAAACTCAATATTGATGTGGTGGAGTTTTACGACGACCAACGTTTTTACCCGCCAGGGCTGACGC
TACAAGCGGTGCCACCTTCGGGGATGCACGACAGCGGCGTGGAGTCGGTCTGGGACTTGTCCAGTGCTCATCAGGTGGTT
GAAAAATCGGTCAGTACCGGCGATTACAACTACCGCACCGCCACTGCCGATATGACGGCCGGGGCAGACATCACTCGCGG
TGATACCACCACCTACGGCGAAGCTTATCATTACGCCGATAACTACCTGATCGCAGGCAGCGAAGAGCGTGAGCCGGAAA
GTGAAAGTGGGGCGTTTTATGCCCGCCTGCGCCATGAACGTTACCTGAACAATCAGGCGCGCTTTTCGGGGGTAGCCAAT
GCGGCGACACTGGGGCCGAGTCAGGAACTGAAAGTCACCGGAAACGATGTGCCGGCACAGTTTGGTAAAGGGGTGATAAT
CATCCGCATCACCAGCTATGCCCGCCGTGACCGCAGCTATGAAGTGCATTTTGAGGCTATCCCTTACTCCGAAGATTATT
GCTTCCGTCCAGCACTTATCCGCAAGCCGACCATGGCCGGGACCTTGCCGGCGCGGGTGACCAGTACCACTGCGAACGAC
ACCTATGGTCATATCGACAAAGACGGGCGTTACCGTGTCAATCTGATGTTCGACCGTGACAGTTGGGAGCAGGGTTACGA
AAGCCTTTGGGTTCGTCAGGCCCGCCCGTATGCGGGTGACACCTACGGCCTGCACCTGCCGCTGCTGGCGGGCACCGAAG
TGGCGATTGCGTTTGAGGATGGCAACCCGGACCGGCCCTATATTGCTTATGTGTTGCACGACTCGGCGCACGGCGACCAT
GTCACCATCAGTAATTACAAACGCAACGTACTTCGCACTCCGTCGAATAACAAACTGCGCCTTGAAGATGAACGGGGCAA
AGAGCACATCAAGCTCAGCACCGAATACGGCGGCAAAAGCCAGTTGAATCTGGGGCATTTGGTTGATAACGAGAAACAGC
CACGGGGTGAAGGTTTTGAGCTGCGTACCGACAGTTTTGGTGCATTGCGTGCAGAAAAGGGCCTCTTTATCAGTGCCGAC
GGTCAGGCCAAAGCCCAGGGGCAGGTGCTGGAGATGCAACCGGCTATTAGCCTGTTGCAAGGTGCTCAGGAACAGATGGA
TGCCATCTCCGCGGATGCACAAACCGCCACCGCCAGTCCGGCCGACCTGCAGGCACAAATCAGTTTGTTGCAGCAAAATC
TGAGTGAGCTGAAACAAGCCGTGGTATTGCTGAGTGCGCCAAAAGGCATTGCCTTGAGCAGTGGTGAGCATCTGCAAATG
TCCGCCAGCGAAAATCTGATAGCCACTGCCGGTAAGAATACCGACATCAGCGTAGCAAAGAACTTATTTATTGGTGTGGG
AAATACCTTAAGTATCTTCGTCAGAAAACTGGGGATGAAGCTGATAGCCAATCAGGGGCCGATAACAGTCCAGGCGCAGA
ATGATCTGATGGAGTTATTGGCGCGCAAGGCGATAACGATCACCAGTACCGAGAATGAGATAAAAATCACCGCCAAGAAG
AGGATTACGCTGAATGCGGGCGGCAGTTATATCACGCTGGATGAGAATCGGATTGAGTCAGGCACGGCTGGTGAATATAT
AACCAAAGCAGGGCATTACGAGCGGCAGGAAAAGGCGAGTTTAAAATCTATAATACCTGCTTTTCCTATTATTGAACCGG
GAGAACATAGTTTACGGTTTGCATTCTATGGTGACGATAATGTTATTGGGTCTATGGGACATCTTGTCGGGCAGCCTTAC
AATATCCGTAATAGCGCTGGTGAAGTTATAGCTTCAGGAGTATTGGATCAATCTGGCCGTTTCCCAAGAGTAAAAACTCA
AGAAGCGGATGAGTTAACGCTGACTTTAGGTGAGGAAAAATGGACAGTAGAAGAGCTTATAGCGTCAACAGAAGATCCTA
TCGGTGAGGAGTTTAGCGAACCTGATGAATACGATGTAGATAGTGATCCTTATTTCGAAAATATCGCTCAAGAACAACAA
AGTAATAGATTGCCTGATACAATAATTAATAAATTTATTGGCTATGTAGAAGAGGATATCTAG