Detailed information of component protein
Summary
| Component ID | T6CP011606 |
| Component protein type | PAAR |
| T6SS ID (Type) | T6SS00222  (Type i2) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (353 a.a.); Nucleotide sequence (1059 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS05330 |
| Coordinate (Strand) | 959627..960685 (+) |
| NCBI ID | WP_012104641.1 |
| RefSeq | NC_009708 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Ntox44 | PF15607.8 | 2e-30 | 196..303 |
| PAAR_motif | PF05488.15 | 5e-08 | 9..75 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-352 | MAKGYYLGVGDQTTCGGVIIEGDATHILMGKAVAREQDRVTCGKHPGTYIIVGHIPGDSIHGRKFAGTLNSQSNCPCKAWFIPSLVHDTYEFGARSKSQNMSEISTEVEREMVENVSESEEKSKVVCAHIDGALVVASYILDEIKKNVKSDTADKIRSFIDNDLYKKRLKEWQDSPWYARMNAPPQPEIISASVLWFMAVKSGAKWDHKPKIRDQFKAYAVSRPLVGSGTRSKSYFHKYEEHDYFYDVWSNIHYGYVGLSLGFDESYLLLGSTLEQVRTSIGSKPDPIDDITCMKIGYALYHQHGKYAETLDVRHILDALESASDLDLAISRQIHWCWNNDNSSQIDHPQGK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9804 | - | - |
Protein sequence: 353 a.a.
>T6CP011606 NC_009708:959627-960685 [Yersinia pseudotuberculosis IP 31758] [PAAR]
MAKGYYLGVGDQTTCGGVIIEGDATHILMGKAVAREQDRVTCGKHPGTYIIVGHIPGDSIHGRKFAGTLNSQSNCPCKAW
FIPSLVHDTYEFGARSKSQNMSEISTEVEREMVENVSESEEKSKVVCAHIDGALVVASYILDEIKKNVKSDTADKIRSFI
DNDLYKKRLKEWQDSPWYARMNAPPQPEIISASVLWFMAVKSGAKWDHKPKIRDQFKAYAVSRPLVGSGTRSKSYFHKYE
EHDYFYDVWSNIHYGYVGLSLGFDESYLLLGSTLEQVRTSIGSKPDPIDDITCMKIGYALYHQHGKYAETLDVRHILDAL
ESASDLDLAISRQIHWCWNNDNSSQIDHPQGK*
MAKGYYLGVGDQTTCGGVIIEGDATHILMGKAVAREQDRVTCGKHPGTYIIVGHIPGDSIHGRKFAGTLNSQSNCPCKAW
FIPSLVHDTYEFGARSKSQNMSEISTEVEREMVENVSESEEKSKVVCAHIDGALVVASYILDEIKKNVKSDTADKIRSFI
DNDLYKKRLKEWQDSPWYARMNAPPQPEIISASVLWFMAVKSGAKWDHKPKIRDQFKAYAVSRPLVGSGTRSKSYFHKYE
EHDYFYDVWSNIHYGYVGLSLGFDESYLLLGSTLEQVRTSIGSKPDPIDDITCMKIGYALYHQHGKYAETLDVRHILDAL
ESASDLDLAISRQIHWCWNNDNSSQIDHPQGK*
Nucleotide sequence: 1059 bp
>T6CP011606 NC_009708:959627-960685 [Yersinia pseudotuberculosis IP 31758] [PAAR]
ATGGCAAAAGGTTATTACCTTGGTGTTGGGGATCAAACAACCTGTGGTGGCGTGATCATCGAAGGTGATGCCACTCATAT
CCTGATGGGCAAAGCCGTGGCCCGTGAGCAAGATAGAGTAACCTGCGGCAAGCATCCGGGAACTTATATCATTGTCGGCC
ACATTCCCGGTGATTCTATTCATGGCCGTAAGTTTGCTGGCACCTTGAATAGTCAAAGCAATTGCCCGTGCAAGGCGTGG
TTTATTCCTTCTTTGGTGCATGATACGTATGAGTTTGGTGCAAGAAGTAAATCACAAAATATGTCTGAAATTAGTACTGA
AGTCGAACGTGAGATGGTAGAAAATGTGAGTGAATCAGAAGAAAAATCTAAAGTTGTCTGTGCCCATATTGATGGCGCTT
TAGTAGTAGCGAGTTATATCCTTGATGAAATAAAGAAAAATGTAAAAAGTGATACCGCTGATAAAATCAGATCTTTTATC
GATAATGACCTCTATAAAAAAAGACTTAAGGAGTGGCAGGATTCTCCTTGGTACGCGAGAATGAATGCACCTCCACAGCC
TGAAATAATATCGGCATCGGTTTTATGGTTTATGGCGGTCAAGAGTGGTGCTAAATGGGATCATAAACCTAAAATTAGAG
ATCAATTTAAAGCATATGCAGTTTCTCGTCCTCTGGTCGGAAGCGGAACCCGATCAAAAAGCTATTTTCATAAATATGAA
GAACATGATTATTTTTATGATGTCTGGTCCAATATTCACTATGGTTATGTAGGCTTAAGTCTTGGTTTTGATGAGTCATA
TTTATTACTTGGCTCAACTCTTGAGCAAGTAAGAACCAGCATCGGGAGTAAACCAGATCCTATAGATGATATTACATGTA
TGAAAATTGGCTATGCACTCTATCATCAACATGGAAAATATGCTGAGACGTTAGATGTCAGGCATATACTCGATGCTCTT
GAATCAGCATCGGACCTTGATCTAGCTATTTCAAGACAAATTCATTGGTGTTGGAATAATGATAATTCGAGTCAAATTGA
TCACCCGCAGGGTAAGTAA
ATGGCAAAAGGTTATTACCTTGGTGTTGGGGATCAAACAACCTGTGGTGGCGTGATCATCGAAGGTGATGCCACTCATAT
CCTGATGGGCAAAGCCGTGGCCCGTGAGCAAGATAGAGTAACCTGCGGCAAGCATCCGGGAACTTATATCATTGTCGGCC
ACATTCCCGGTGATTCTATTCATGGCCGTAAGTTTGCTGGCACCTTGAATAGTCAAAGCAATTGCCCGTGCAAGGCGTGG
TTTATTCCTTCTTTGGTGCATGATACGTATGAGTTTGGTGCAAGAAGTAAATCACAAAATATGTCTGAAATTAGTACTGA
AGTCGAACGTGAGATGGTAGAAAATGTGAGTGAATCAGAAGAAAAATCTAAAGTTGTCTGTGCCCATATTGATGGCGCTT
TAGTAGTAGCGAGTTATATCCTTGATGAAATAAAGAAAAATGTAAAAAGTGATACCGCTGATAAAATCAGATCTTTTATC
GATAATGACCTCTATAAAAAAAGACTTAAGGAGTGGCAGGATTCTCCTTGGTACGCGAGAATGAATGCACCTCCACAGCC
TGAAATAATATCGGCATCGGTTTTATGGTTTATGGCGGTCAAGAGTGGTGCTAAATGGGATCATAAACCTAAAATTAGAG
ATCAATTTAAAGCATATGCAGTTTCTCGTCCTCTGGTCGGAAGCGGAACCCGATCAAAAAGCTATTTTCATAAATATGAA
GAACATGATTATTTTTATGATGTCTGGTCCAATATTCACTATGGTTATGTAGGCTTAAGTCTTGGTTTTGATGAGTCATA
TTTATTACTTGGCTCAACTCTTGAGCAAGTAAGAACCAGCATCGGGAGTAAACCAGATCCTATAGATGATATTACATGTA
TGAAAATTGGCTATGCACTCTATCATCAACATGGAAAATATGCTGAGACGTTAGATGTCAGGCATATACTCGATGCTCTT
GAATCAGCATCGGACCTTGATCTAGCTATTTCAAGACAAATTCATTGGTGTTGGAATAATGATAATTCGAGTCAAATTGA
TCACCCGCAGGGTAAGTAA