Detailed information of component protein
Summary
| Component ID | T6CP009303 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00222  (Type i2) |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon | chromosome |
| Sequence | Protein sequence (229 a.a.); Nucleotide sequence (687 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPSIP31758_RS05260 |
| Coordinate (Strand) | 936427..937113 (+) |
| NCBI ID | WP_012104628.1 |
| RefSeq | NC_009708 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 2.1e-41 | 14..215 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-192 | MNHQITEHSPTGNIDALLQDTWLQVISLRQGMACSEGEGQAFWQRCVADIERVHQALKDAGHSEQSCQHIRYAQCALLDETVKGRGVQDDAYFVWCHSPLQAHFFNTLDAGNQLYERMRTVLREPAPDSAVLTCFHRVLMLGFLGGYRSVAVPEREQLVSQLTARVPAFSFLPSRGILATASSRNRLGVWLR |
| Transmembrane helix | 193-212 | YWPVRLGLAALMVALLWWGL |
| Outside | 213-228 | DHWLSGLLLTLLPGPM |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9818 | - | - |
Protein sequence: 229 a.a.
>T6CP009303 NC_009708:936427-937113 [Yersinia pseudotuberculosis IP 31758] [TssL]
MNHQITEHSPTGNIDALLQDTWLQVISLRQGMACSEGEGQAFWQRCVADIERVHQALKDAGHSEQSCQHIRYAQCALLDE
TVKGRGVQDDAYFVWCHSPLQAHFFNTLDAGNQLYERMRTVLREPAPDSAVLTCFHRVLMLGFLGGYRSVAVPEREQLVS
QLTARVPAFSFLPSRGILATASSRNRLGVWLRYWPVRLGLAALMVALLWWGLDHWLSGLLLTLLPGPM*
MNHQITEHSPTGNIDALLQDTWLQVISLRQGMACSEGEGQAFWQRCVADIERVHQALKDAGHSEQSCQHIRYAQCALLDE
TVKGRGVQDDAYFVWCHSPLQAHFFNTLDAGNQLYERMRTVLREPAPDSAVLTCFHRVLMLGFLGGYRSVAVPEREQLVS
QLTARVPAFSFLPSRGILATASSRNRLGVWLRYWPVRLGLAALMVALLWWGLDHWLSGLLLTLLPGPM*
Nucleotide sequence: 687 bp
>T6CP009303 NC_009708:936427-937113 [Yersinia pseudotuberculosis IP 31758] [TssL]
ATGAACCATCAAATAACTGAACACTCCCCTACGGGGAATATTGATGCATTACTACAGGATACCTGGCTGCAGGTGATCAG
CCTGCGTCAGGGAATGGCCTGCTCCGAAGGCGAAGGGCAGGCATTTTGGCAACGCTGTGTGGCAGACATTGAACGTGTCC
ATCAGGCGCTGAAAGATGCCGGCCACAGCGAACAGAGTTGCCAGCACATCAGGTACGCACAATGTGCTCTGCTGGATGAA
ACTGTGAAAGGCCGCGGTGTACAGGATGATGCCTACTTTGTATGGTGTCACTCGCCCTTGCAGGCGCATTTTTTCAACAC
TCTAGATGCCGGTAACCAACTTTATGAGCGGATGCGCACCGTGTTGCGTGAGCCCGCACCCGATAGTGCAGTACTGACCT
GTTTTCACCGGGTGTTGATGTTGGGGTTCCTCGGGGGATATCGCTCTGTTGCGGTACCTGAACGAGAACAACTGGTTAGC
CAACTGACGGCACGGGTGCCGGCGTTCAGCTTTTTACCATCACGAGGGATCTTGGCAACAGCCTCATCCCGTAACCGTCT
TGGGGTCTGGCTGCGTTACTGGCCAGTGCGACTGGGGTTGGCTGCGCTGATGGTCGCGCTGCTGTGGTGGGGTCTTGACC
ACTGGCTATCTGGTTTGTTACTGACATTGTTACCGGGGCCAATGTGA
ATGAACCATCAAATAACTGAACACTCCCCTACGGGGAATATTGATGCATTACTACAGGATACCTGGCTGCAGGTGATCAG
CCTGCGTCAGGGAATGGCCTGCTCCGAAGGCGAAGGGCAGGCATTTTGGCAACGCTGTGTGGCAGACATTGAACGTGTCC
ATCAGGCGCTGAAAGATGCCGGCCACAGCGAACAGAGTTGCCAGCACATCAGGTACGCACAATGTGCTCTGCTGGATGAA
ACTGTGAAAGGCCGCGGTGTACAGGATGATGCCTACTTTGTATGGTGTCACTCGCCCTTGCAGGCGCATTTTTTCAACAC
TCTAGATGCCGGTAACCAACTTTATGAGCGGATGCGCACCGTGTTGCGTGAGCCCGCACCCGATAGTGCAGTACTGACCT
GTTTTCACCGGGTGTTGATGTTGGGGTTCCTCGGGGGATATCGCTCTGTTGCGGTACCTGAACGAGAACAACTGGTTAGC
CAACTGACGGCACGGGTGCCGGCGTTCAGCTTTTTACCATCACGAGGGATCTTGGCAACAGCCTCATCCCGTAACCGTCT
TGGGGTCTGGCTGCGTTACTGGCCAGTGCGACTGGGGTTGGCTGCGCTGATGGTCGCGCTGCTGTGGTGGGGTCTTGACC
ACTGGCTATCTGGTTTGTTACTGACATTGTTACCGGGGCCAATGTGA