Detailed information of component protein


Summary

Component ID T6CP002214
Component protein type TssM
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (1141 a.a.); Nucleotide sequence (3423 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05320
Coordinate (Strand) 954541..957963 (+)
NCBI ID WP_012104639.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 2e-64 418..735
IcmF_C PF06744.14 7.2e-22 999..1098
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 VKRIALPIKKPE
Transmembrane helix 13-35 VWFWIVALLFLLAGAVLCWLVWQ
Outside 36-49 HPERVGLIQGTPQR
Transmembrane helix 50-72 DRWLTGLVVGTGILTLCALLSYV
Inside 73-369 GTRLSGRKHFDEIRQQAQGDDVSLLKENAKVGDIQQSELSHLKTRLRRRYGLFWRYKVRLLMVVGEPDEIAALAPQLAEQGWLEGQRTVLIHGDSVQSPADETGLSEWRKLRRGRPFDGIVWAITAAQSSHPQWMDNGLRTLEKMGATLRYQPPVYLWQVCGSGWPQDTRVEQPVGVVFPAKATPEQVELQLRALLPQLREQGMQQLSVEPHHDFLLRLAQSLEQGDATRWRQRLTPWFTEYAARIPLRGLMFSLPEVSTSAARVHEKNWTASDRWQGILDDCRSARGRRVGLPWEQ
Transmembrane helix 370-392 TLCYSLLALIVLWGVGSVVSFAV
Outside 393-1140 NRHQMVSAAQQAQQLAQSQAVSDQQLMALQALRNDIGRLQSRVAQGAPWYQRFGLDHNAPLLEVLMPWYGQANNRILRDATAQSLHQKLSELAELPANSPQRAVLAKTGYDQLKAYLMMSRPEKADAAFYAQVMQTTEPVRAGVSPGLWQSLAPDLWQFYAQNLPAQPDWKIKPDTGLVSQVRQVLLGQIGQRNAESTLYENMLLSVRRNYADMTLTDMTGDTDAQRLFQTSESVPGMFTRKAWDEQIQQAIDKTVASRREEIDWVLSDNRRAISEDISPEALKKRLTERYFTDFAGSWLSFLNSLHWNEAHNLSDVIDQLTLMSDVRQSPLIALMNTLAWQGQTGQQNQALSDSLVKSAKALMNKDQAPAIDQSAGGPVGPLDETFGPLLALMGKGDAQNRLSSDSSLSLQTLLTRVTRVRLKLQQVVNASNPQEMTQVLAQTVFQGKSVDLTDTQEYGSLIAASLGEEWSSFGQTMFVQPLTQAWETVLQPSSASLNDQWKNAVVANWKSAFDGRYPFAASKSDASLPMLAEFIRKDSGRIDSFLTRELGGVLHKEGTRWVPSKVNSQGLTFNSDFLAAINQLSQVSDILFTDGSQGLRFELLARPVPNVVETHLAIDGQKLHYFNQMESWQSFRWPGDTYKPGTLLTWTGVNSGARLYGDYQGTWGLIRWLEQAKQKKLDEGRYQLTFTTADNLPLQWILRTELGKGPLGLLQLRNFTLPAQIFLIQSAPSAASDRTDDEDMAED


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9950 - -


  Protein sequence: 1141 a.a.    

>T6CP002214 NC_009708:954541-957963 [Yersinia pseudotuberculosis IP 31758] [TssM]
VKRIALPIKKPEVWFWIVALLFLLAGAVLCWLVWQHPERVGLIQGTPQRDRWLTGLVVGTGILTLCALLSYVGTRLSGRK
HFDEIRQQAQGDDVSLLKENAKVGDIQQSELSHLKTRLRRRYGLFWRYKVRLLMVVGEPDEIAALAPQLAEQGWLEGQRT
VLIHGDSVQSPADETGLSEWRKLRRGRPFDGIVWAITAAQSSHPQWMDNGLRTLEKMGATLRYQPPVYLWQVCGSGWPQD
TRVEQPVGVVFPAKATPEQVELQLRALLPQLREQGMQQLSVEPHHDFLLRLAQSLEQGDATRWRQRLTPWFTEYAARIPL
RGLMFSLPEVSTSAARVHEKNWTASDRWQGILDDCRSARGRRVGLPWEQTLCYSLLALIVLWGVGSVVSFAVNRHQMVSA
AQQAQQLAQSQAVSDQQLMALQALRNDIGRLQSRVAQGAPWYQRFGLDHNAPLLEVLMPWYGQANNRILRDATAQSLHQK
LSELAELPANSPQRAVLAKTGYDQLKAYLMMSRPEKADAAFYAQVMQTTEPVRAGVSPGLWQSLAPDLWQFYAQNLPAQP
DWKIKPDTGLVSQVRQVLLGQIGQRNAESTLYENMLLSVRRNYADMTLTDMTGDTDAQRLFQTSESVPGMFTRKAWDEQI
QQAIDKTVASRREEIDWVLSDNRRAISEDISPEALKKRLTERYFTDFAGSWLSFLNSLHWNEAHNLSDVIDQLTLMSDVR
QSPLIALMNTLAWQGQTGQQNQALSDSLVKSAKALMNKDQAPAIDQSAGGPVGPLDETFGPLLALMGKGDAQNRLSSDSS
LSLQTLLTRVTRVRLKLQQVVNASNPQEMTQVLAQTVFQGKSVDLTDTQEYGSLIAASLGEEWSSFGQTMFVQPLTQAWE
TVLQPSSASLNDQWKNAVVANWKSAFDGRYPFAASKSDASLPMLAEFIRKDSGRIDSFLTRELGGVLHKEGTRWVPSKVN
SQGLTFNSDFLAAINQLSQVSDILFTDGSQGLRFELLARPVPNVVETHLAIDGQKLHYFNQMESWQSFRWPGDTYKPGTL
LTWTGVNSGARLYGDYQGTWGLIRWLEQAKQKKLDEGRYQLTFTTADNLPLQWILRTELGKGPLGLLQLRNFTLPAQIFL
IQSAPSAASDRTDDEDMAED*

  Nucleotide sequence: 3423 bp    

>T6CP002214 NC_009708:954541-957963 [Yersinia pseudotuberculosis IP 31758] [TssM]
GTGAAGCGCATTGCCTTACCGATTAAAAAGCCAGAAGTCTGGTTCTGGATTGTTGCTCTGTTATTTTTGCTGGCGGGTGC
CGTGTTGTGCTGGCTGGTCTGGCAACATCCAGAACGGGTAGGATTAATTCAGGGAACACCGCAACGTGATCGCTGGCTGA
CGGGACTGGTGGTGGGAACAGGGATACTGACCTTGTGCGCATTACTGTCGTATGTGGGGACCCGATTATCCGGCAGAAAA
CACTTTGATGAGATACGGCAGCAGGCACAAGGTGATGATGTGTCGTTGCTGAAAGAAAACGCGAAGGTGGGAGATATTCA
GCAGAGCGAACTGTCCCATTTGAAAACCCGTCTGCGCCGCCGTTACGGGCTGTTCTGGCGCTACAAAGTCCGGTTGCTGA
TGGTGGTGGGAGAGCCTGACGAAATCGCTGCATTGGCTCCGCAACTGGCGGAACAGGGCTGGCTGGAAGGGCAGCGTACG
GTGCTGATTCACGGTGATAGTGTCCAAAGTCCAGCCGATGAAACCGGGCTGAGTGAGTGGCGTAAACTGCGCCGTGGCCG
CCCGTTTGATGGCATTGTTTGGGCGATAACCGCCGCGCAAAGTAGTCATCCACAGTGGATGGACAACGGCCTGCGGACGC
TGGAGAAAATGGGCGCAACCTTGCGCTATCAACCGCCGGTGTATCTGTGGCAGGTCTGCGGCAGCGGCTGGCCTCAGGAT
ACGCGGGTGGAGCAGCCGGTCGGGGTGGTGTTCCCGGCGAAGGCCACGCCAGAGCAGGTTGAGCTTCAACTGCGCGCTCT
GTTGCCTCAGTTACGTGAGCAGGGGATGCAGCAGCTTTCTGTCGAACCGCACCATGATTTCTTGTTGCGTCTGGCGCAGT
CGCTGGAGCAGGGCGATGCCACCCGCTGGCGGCAGCGTCTGACGCCGTGGTTTACCGAGTATGCGGCGCGTATTCCCCTG
CGTGGGTTGATGTTCAGTTTGCCGGAGGTATCAACATCGGCGGCGCGTGTGCACGAGAAAAACTGGACTGCATCTGACCG
CTGGCAGGGGATACTGGATGACTGTCGTTCTGCCCGTGGACGCCGTGTCGGGCTGCCGTGGGAGCAGACATTGTGCTACA
GCTTGCTGGCACTGATAGTGCTGTGGGGCGTGGGCAGTGTCGTGTCATTTGCGGTCAACCGTCACCAAATGGTCTCTGCC
GCGCAGCAGGCACAGCAACTGGCGCAGTCGCAAGCGGTCTCTGACCAGCAACTCATGGCCCTACAAGCCCTGCGCAATGA
TATCGGGCGCTTACAATCTCGCGTGGCGCAGGGGGCACCTTGGTATCAGCGCTTTGGCCTGGATCATAATGCGCCGCTGC
TTGAGGTCCTGATGCCGTGGTATGGCCAGGCCAACAACCGCATTCTTAGGGATGCTACCGCGCAAAGCCTGCATCAGAAA
CTCAGTGAACTGGCGGAGCTGCCCGCCAACAGCCCGCAACGTGCGGTACTGGCAAAAACAGGCTATGACCAGTTAAAGGC
CTATCTGATGATGTCACGTCCGGAAAAAGCCGATGCTGCATTTTATGCACAGGTGATGCAGACCACCGAGCCTGTGCGTG
CCGGTGTATCTCCTGGTCTGTGGCAGAGTCTGGCCCCAGACTTATGGCAATTTTATGCGCAAAACCTGCCTGCTCAGCCG
GACTGGAAAATTAAACCGGATACCGGGTTGGTAAGCCAGGTACGGCAGGTCTTACTGGGGCAGATTGGTCAGCGCAATGC
AGAAAGTACGCTGTATGAAAACATGCTGCTATCAGTGCGTCGCAACTATGCCGACATGACGCTGACGGACATGACCGGCG
ACACTGATGCTCAGCGTCTGTTCCAGACCTCGGAATCCGTGCCCGGTATGTTTACCCGCAAGGCCTGGGATGAGCAAATC
CAGCAGGCAATAGATAAAACGGTGGCCTCCCGCCGCGAAGAGATTGACTGGGTATTGAGTGATAACCGCCGGGCGATATC
CGAAGATATCTCACCGGAAGCGCTGAAAAAACGCCTGACCGAACGTTATTTCACCGATTTTGCTGGCAGTTGGCTGAGTT
TCCTCAACAGTTTGCACTGGAATGAGGCGCATAACCTGTCGGATGTGATTGACCAACTGACCTTGATGAGTGATGTACGC
CAGTCGCCGCTGATTGCGCTAATGAACACGCTGGCGTGGCAAGGGCAGACCGGGCAGCAGAATCAGGCATTATCGGATTC
GCTGGTGAAGTCTGCCAAGGCGCTGATGAATAAAGACCAGGCTCCGGCGATTGACCAGAGTGCCGGTGGGCCAGTAGGGC
CACTGGACGAGACCTTTGGCCCGTTGCTGGCACTGATGGGCAAAGGCGATGCACAAAACAGGCTGTCGTCGGACAGCTCG
CTGAGCCTGCAAACGTTGCTCACCCGCGTGACCCGGGTGCGGCTTAAACTCCAGCAAGTGGTTAATGCCTCGAACCCACA
AGAGATGACTCAGGTGCTGGCCCAGACCGTTTTCCAGGGGAAAAGTGTCGACCTGACGGACACGCAGGAGTACGGCAGCC
TGATTGCCGCCAGTCTGGGGGAAGAGTGGAGCAGTTTCGGGCAGACGATGTTTGTTCAGCCGCTGACGCAGGCGTGGGAG
ACCGTGTTGCAACCTTCGTCGGCCAGCCTTAACGACCAGTGGAAAAACGCGGTGGTGGCCAATTGGAAATCAGCCTTTGA
CGGGCGTTACCCGTTTGCCGCCAGTAAAAGCGATGCTTCACTGCCGATGCTGGCCGAATTTATTCGTAAGGATAGCGGGC
GTATCGACAGCTTCCTGACCCGTGAGCTGGGTGGCGTGCTGCATAAAGAAGGGACGCGCTGGGTTCCGAGTAAAGTGAAC
AGCCAGGGGCTAACGTTTAACTCGGACTTTCTGGCGGCCATTAATCAACTGAGTCAAGTCTCCGATATTCTGTTCACTGA
CGGCAGTCAGGGGCTGCGCTTTGAGCTACTGGCACGCCCGGTTCCGAATGTGGTGGAAACCCATTTAGCGATTGATGGAC
AGAAATTGCATTATTTCAACCAGATGGAAAGTTGGCAGAGTTTCCGCTGGCCGGGTGATACCTACAAACCCGGCACGCTA
TTGACCTGGACTGGCGTGAATTCCGGGGCCCGTTTATACGGTGATTATCAGGGGACATGGGGATTGATCCGCTGGCTGGA
ACAGGCAAAACAGAAAAAGCTGGATGAAGGGCGTTATCAACTGACCTTCACCACCGCGGATAACCTACCACTGCAATGGA
TATTACGCACTGAGCTGGGCAAAGGTCCATTAGGTCTGCTGCAACTGCGTAACTTTACCCTGCCTGCGCAAATTTTTCTG
ATACAGAGCGCCCCTTCAGCGGCATCTGATCGGACCGATGATGAGGATATGGCAGAGGATTAA