Detailed information of component protein


Summary

Component ID T6CP002216
Component protein type TssG
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (362 a.a.); Nucleotide sequence (1086 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05345
Coordinate (Strand) 963127..964212 (+)
NCBI ID WP_012104644.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.5e-74 22..319
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-361 MGRESHDPNSRLITRLKRDIGQINFYRFCQLLEQQPGTLPLGSTNNPADDPVRFRPHPGMGFPVSELKALETDPDQPDAPLTARTTFMGLYGVDSPLPTAYIDDITQQREGHEALEGFLDIFNHRFMTQFYRIWRKYSYPATFESGGKDNTSQSLLGLIGMGIPGSQQHFATPTSRFLALLGVMRQPGRTAEGVQALVRLLAPFTQADVTPHCLRTVRLTSQMTFADEGGNWLDGYTVLGDEAIDANSQLLISLQTEDRDEAGDWLPDGPLYTDFLVLLRVYLGWRYRACIQLTVATRLLPALVLDETPVRLGLTGVLGLDDDTLSDDIPEYYTVELGHYSGLTPQKYQEGNRRVSYYFEK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9797 - -


  Protein sequence: 362 a.a.    

>T6CP002216 NC_009708:963127-964212 [Yersinia pseudotuberculosis IP 31758] [TssG]
MGRESHDPNSRLITRLKRDIGQINFYRFCQLLEQQPGTLPLGSTNNPADDPVRFRPHPGMGFPVSELKALETDPDQPDAP
LTARTTFMGLYGVDSPLPTAYIDDITQQREGHEALEGFLDIFNHRFMTQFYRIWRKYSYPATFESGGKDNTSQSLLGLIG
MGIPGSQQHFATPTSRFLALLGVMRQPGRTAEGVQALVRLLAPFTQADVTPHCLRTVRLTSQMTFADEGGNWLDGYTVLG
DEAIDANSQLLISLQTEDRDEAGDWLPDGPLYTDFLVLLRVYLGWRYRACIQLTVATRLLPALVLDETPVRLGLTGVLGL
DDDTLSDDIPEYYTVELGHYSGLTPQKYQEGNRRVSYYFEK*

  Nucleotide sequence: 1086 bp    

>T6CP002216 NC_009708:963127-964212 [Yersinia pseudotuberculosis IP 31758] [TssG]
ATGGGAAGAGAATCACACGACCCGAATTCCCGGCTGATCACTCGGCTTAAGCGGGATATCGGACAGATCAATTTTTACCG
CTTCTGTCAGTTGCTGGAGCAACAACCGGGAACCTTGCCGCTGGGGAGTACCAATAACCCGGCGGATGATCCGGTGCGCT
TTCGTCCGCATCCGGGCATGGGGTTCCCGGTCAGTGAGCTGAAGGCGCTGGAAACTGACCCGGATCAGCCTGATGCACCG
CTGACGGCGCGCACCACCTTTATGGGGTTGTACGGTGTGGATTCTCCCCTGCCGACAGCTTATATCGACGATATTACGCA
GCAGCGTGAGGGGCATGAGGCGCTGGAAGGGTTCCTCGATATCTTCAACCATCGCTTTATGACGCAGTTTTATCGCATTT
GGCGCAAATATTCCTATCCGGCCACTTTTGAGTCGGGCGGCAAAGATAACACCTCCCAAAGCCTGTTGGGGCTGATTGGC
ATGGGTATTCCCGGTTCGCAGCAGCATTTTGCCACCCCGACATCACGCTTTCTGGCCCTGCTGGGGGTGATGCGTCAACC
GGGGCGAACTGCCGAAGGGGTACAGGCACTGGTCCGACTGCTGGCCCCCTTTACGCAGGCTGATGTGACGCCCCATTGCC
TGCGTACGGTTCGTCTGACCTCACAGATGACATTTGCCGACGAAGGGGGCAACTGGCTGGACGGTTACACCGTACTGGGC
GATGAGGCCATCGATGCCAACAGTCAGTTATTGATTTCTCTGCAGACGGAAGATCGCGACGAGGCCGGTGACTGGTTACC
GGATGGCCCATTGTATACCGATTTTCTGGTGCTGTTGCGGGTGTATCTGGGCTGGCGCTATCGAGCCTGTATTCAACTGA
CTGTCGCAACACGGTTGCTGCCGGCGTTGGTGTTGGATGAGACGCCGGTCAGGTTGGGACTGACCGGGGTGCTGGGGCTG
GATGACGATACGCTGTCAGACGATATACCTGAATACTATACCGTGGAACTGGGACACTACAGTGGACTGACTCCACAGAA
ATACCAAGAAGGAAACCGACGTGTTAGCTATTACTTCGAAAAATAA