Detailed information of component protein


Summary

Component ID T6CP002212
Component protein type TssI
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (833 a.a.); Nucleotide sequence (2499 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05280
Coordinate (Strand) 942531..945029 (+)
NCBI ID WP_012104631.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.9e-62 34..354
DUF2345 PF10106.11 4.7e-51 611..751
T6SS_Vgr PF13296.8 2.9e-34 492..592
Phage_base_V PF04717.14 1.6e-09 406..472
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-832 MNTSLPAIRFDHSHHKLVVRDSTAPVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMQDASLTLAAPVAEAFGVTVQQTQRVIHGVVTGFKRLSASKDECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPRREQVMQYGEDDLTFISRLLAEVGLWFRFTADPKLNIDVVEFYDDQRFYPPGLTLQAVPPSGMHDSGVESVWDLSSAHQVVEKSVSTGDYNYRTATADMTAGADITRGDTTTYGEAYHYADNYLIAGSEEREPESESGAFYARLRHERYLNNQARFSGVANAATLGPGQELKVTGSDVPAQFGKGVIITRITSYARRDRSYEVHFEAIPYSEEYCFRPALIRKPTMAGTLPARVTSTTANDTYGHIDKDGRYRVNLMFDRDSWEPGYESLWVRQARPYAGDTYGLHLPLLAGTEVAIAFEDGNPDRPYIASVLHDSAHGDHVTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAEKGLFISADGQAKAQGQVLEMQPAISLLQGAQEQMDAISADAQTATASPADLQAQISLLQQNLSELKQAVVLLSAPKGIALSSGEHLQMSASENLIATAGKNTDISVAKNFFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTEDEIKITAKKKITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRQEKAKQVVAMPEFQLIPGGKHNLQFLFTDDDNVPYSNTPYIAYLVDGREIKGVTDAKGNTEKFVTDEEQNIKINLQV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9899 - -


  Protein sequence: 833 a.a.    

>T6CP002212 NC_009708:942531-945029 [Yersinia pseudotuberculosis IP 31758] [TssI]
MNTSLPAIRFDHSHHKLVVRDSTAPVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMQDASLTLAAPVAEAFGVTV
QQTQRVIHGVVTGFKRLSASKDECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPR
REQVMQYGEDDLTFISRLLAEVGLWFRFTADPKLNIDVVEFYDDQRFYPPGLTLQAVPPSGMHDSGVESVWDLSSAHQVV
EKSVSTGDYNYRTATADMTAGADITRGDTTTYGEAYHYADNYLIAGSEEREPESESGAFYARLRHERYLNNQARFSGVAN
AATLGPGQELKVTGSDVPAQFGKGVIITRITSYARRDRSYEVHFEAIPYSEEYCFRPALIRKPTMAGTLPARVTSTTAND
TYGHIDKDGRYRVNLMFDRDSWEPGYESLWVRQARPYAGDTYGLHLPLLAGTEVAIAFEDGNPDRPYIASVLHDSAHGDH
VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAEKGLFISAD
GQAKAQGQVLEMQPAISLLQGAQEQMDAISADAQTATASPADLQAQISLLQQNLSELKQAVVLLSAPKGIALSSGEHLQM
SASENLIATAGKNTDISVAKNFFIGVGNTLSIFVRKLGMKLIANQGPITVQAQNDLMELLARKAITITSTEDEIKITAKK
KITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRQEKAKQVVAMPEFQLIPGGKHNLQFLFTDDDNVPYSNTPYIAYLV
DGREIKGVTDAKGNTEKFVTDEEQNIKINLQV*

  Nucleotide sequence: 2499 bp    

>T6CP002212 NC_009708:942531-945029 [Yersinia pseudotuberculosis IP 31758] [TssI]
ATGAATACCTCTCTCCCTGCTATTCGGTTTGACCATAGCCACCACAAACTGGTGGTCCGCGACAGCACGGCTCCCGTCGA
TGTGCTGGGTTTTGAAGGCCACGAAAGCTTAAGTCAGCCGTTCTGTTACGACATTCAATTTACCAGCGCAGACAAGGCGA
TTGACCCGGCCACGATGCTGATGCAGGACGCGTCACTGACATTGGCGGCCCCGGTGGCCGAAGCCTTTGGCGTGACGGTT
CAGCAGACCCAGCGGGTGATCCACGGCGTGGTGACCGGATTTAAACGCCTGTCTGCTTCAAAAGATGAATGCCGTTACGA
ACTGAGCCTGCAACCGCGTTTGGCTTTGTTGTCGCGTAGCCATCAGAACGGGATTTATCAGGACATGTCGGTGCCGCAGA
TTGTGGAAAAAATTCTGCGTGAGCGCCATGACATGCGCGGTCAGGATTTTGTCTTCACGCTGGCCCGCGAGTACCCCCGC
CGTGAGCAGGTGATGCAGTACGGCGAAGATGACCTGACCTTTATCAGCCGCCTGCTGGCGGAAGTGGGGCTCTGGTTTCG
TTTTACCGCTGACCCCAAACTCAATATTGATGTGGTGGAGTTTTACGACGACCAACGTTTTTACCCGCCAGGGCTGACGC
TACAAGCGGTGCCACCTTCGGGGATGCACGACAGCGGCGTGGAGTCGGTCTGGGACTTGTCCAGTGCTCATCAGGTGGTT
GAAAAATCGGTCAGTACCGGCGATTACAACTACCGCACCGCCACTGCCGATATGACGGCCGGGGCAGACATCACTCGCGG
TGATACCACCACCTACGGCGAAGCTTATCATTACGCCGATAACTACCTGATCGCAGGCAGCGAAGAGCGTGAGCCGGAAA
GTGAAAGTGGGGCGTTTTATGCCCGCCTGCGCCATGAACGTTACCTCAATAATCAGGCGCGTTTTTCGGGGGTGGCCAAT
GCGGCGACACTGGGGCCGGGTCAGGAGCTGAAAGTCACCGGAAGCGATGTGCCGGCACAGTTTGGTAAAGGGGTGATAAT
CACCCGCATCACCAGCTATGCCCGCCGTGACCGCAGCTATGAAGTGCATTTTGAGGCCATCCCTTACTCCGAAGAGTATT
GCTTCCGTCCAGCGCTTATCCGTAAGCCGACCATGGCCGGAACCTTGCCGGCGCGGGTGACCAGCACCACTGCGAACGAC
ACTTATGGTCATATCGACAAAGACGGGCGCTACCGTGTCAACCTGATGTTCGACCGTGACAGTTGGGAGCCGGGTTACGA
AAGCCTTTGGGTTCGTCAGGCCCGCCCGTATGCGGGTGACACCTACGGCCTGCACCTGCCGCTGCTGGCGGGCACCGAAG
TGGCGATTGCGTTTGAAGATGGCAATCCGGACCGGCCGTATATTGCCTCTGTGTTGCACGACTCGGCGCACGGCGACCAT
GTCACCATCAGTAATTACAAACGTAACGTACTGCGTACTCCGTCGAATAACAAACTGCGCCTTGAAGATGAACGGGGTAA
AGAGCACATCAAGCTCAGCACCGAATACGGCGGCAAAAGCCAACTGAATCTGGGGCATTTGGTTGATAACGAGAAACAAC
CACGGGGTGAAGGTTTTGAGCTGCGTACCGACAGTTTTGGTGCATTGCGTGCAGAAAAGGGCCTCTTTATCAGTGCCGAC
GGTCAGGCCAAAGCCCAGGGGCAGGTGCTGGAGATGCAACCGGCTATTAGCCTGTTGCAAGGTGCTCAGGAACAGATGGA
TGCCATCTCCGCGGATGCACAAACCGCCACCGCCAGTCCGGCCGACCTGCAGGCACAAATCAGTTTGTTGCAGCAAAATC
TGAGTGAGCTGAAACAAGCCGTGGTATTGCTGAGTGCGCCAAAAGGCATTGCCTTGAGCAGTGGTGAGCATCTGCAAATG
TCCGCCAGCGAAAATCTGATAGCCACTGCCGGTAAGAATACCGACATCAGCGTAGCAAAGAACTTCTTTATTGGTGTGGG
AAATACCTTAAGTATCTTCGTCAGAAAACTGGGGATGAAGTTGATAGCCAATCAGGGTCCAATAACGGTACAGGCGCAAA
ATGACCTGATGGAGTTATTGGCGCGCAAAGCGATAACGATCACCAGTACCGAGGATGAGATAAAAATCACCGCCAAGAAG
AAGATAACGCTAAATGCAGGCGGCAGTTATATCACGCTGGATGAGAACCGGATCGAGTCAGGAACGGCGGGGGAATATCT
GACCAAGGCAGGGTATTACGGGCGACAGGAAAAAGCGAAGCAGGTAGTGGCAATGCCAGAATTTCAGCTGATTCCCGGTG
GGAAGCATAATCTACAATTTCTATTTACCGATGATGATAATGTACCTTATTCAAATACACCGTATATTGCTTATCTTGTC
GATGGAAGAGAAATTAAAGGAGTGACAGATGCAAAAGGTAATACGGAAAAATTTGTTACCGATGAAGAGCAAAATATAAA
AATAAATTTACAGGTATAG