Detailed information of component protein


Summary

Component ID T6CP011607
Component protein type TagL
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (574 a.a.); Nucleotide sequence (1722 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05265
Coordinate (Strand) 937113..938834 (+)
NCBI ID WP_012104629.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 1.1e-15 446..542
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MSPLWR
Transmembrane helix 7-26 YGLWLWAGLLAGILCLAFLP
Outside 27-30 FSPL
Transmembrane helix 31-48 VGWLMLLPVALICLVGIG
Inside 49-328 RARRQPNRAFSEPLFSGLASENPLPPENHRLPVVLVCGDGLTSLFGTERMLQTAQGCWLRVDEINSLQLFTRQLLWQRPEWAAQLAVMMVVNPQQRSDERQLAADLQELRWQLMQLCSDTRHRIPLLVSSTVATLMAHDAVWLSQQQTPPLTLWSTVSTPGSLADWQRTQSNVVQAERLKQTVLFSCHHDWLKAQVLPVLQARNEDVAPVAVQQIIQQQVAGLPDIEQSSLWQHWLTAHTSLTQVSGWHPPSTAAHDVLPLPDFVFSVLPLGSGVSSRRR
Transmembrane helix 329-351 VLRHSVTLLTLAAMVALCSSAWQ
Outside 352-573 NRQLLQRVTFDIRHYYSVAMTDHAPKAQAVAVLRGDAEELDNEFRNGEPLRLGLGLYQGWRLRLPLLAAVKTYVPPPPAIDKETPTTVRLDSLSLFDVGKFQLKPGSIKMLVDALMNIRAKPGWLIVVAGHTDITGDAQANQILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPVATNESAEGRAANRRVEISLVPQADACQVPETVNRSQEHATSLSK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9816 - -


  Protein sequence: 574 a.a.    

>T6CP011607 NC_009708:937113-938834 [Yersinia pseudotuberculosis IP 31758] [TagL]
MSPLWRYGLWLWAGLLAGILCLAFLPFSPLVGWLMLLPVALICLVGIGRARRQPNRAFSEPLFSGLASENPLPPENHRLP
VVLVCGDGLTSLFGTERMLQTAQGCWLRVDEINSLQLFTRQLLWQRPEWAAQLAVMMVVNPQQRSDERQLAADLQELRWQ
LMQLCSDTRHRIPLLVSSTVATLMAHDAVWLSQQQTPPLTLWSTVSTPGSLADWQRTQSNVVQAERLKQTVLFSCHHDWL
KAQVLPVLQARNEDVAPVAVQQIIQQQVAGLPDIEQSSLWQHWLTAHTSLTQVSGWHPPSTAAHDVLPLPDFVFSVLPLG
SGVSSRRRVLRHSVTLLTLAAMVALCSSAWQNRQLLQRVTFDIRHYYSVAMTDHAPKAQAVAVLRGDAEELDNEFRNGEP
LRLGLGLYQGWRLRLPLLAAVKTYVPPPPAIDKETPTTVRLDSLSLFDVGKFQLKPGSIKMLVDALMNIRAKPGWLIVVA
GHTDITGDAQANQILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPVATNESAEGRAANRRVEISLVPQADACQVPET
VNRSQEHATSLSK*

  Nucleotide sequence: 1722 bp    

>T6CP011607 NC_009708:937113-938834 [Yersinia pseudotuberculosis IP 31758] [TagL]
ATGAGTCCGTTGTGGCGATATGGGTTATGGCTATGGGCGGGTCTTCTGGCGGGCATATTGTGTCTGGCGTTCTTGCCTTT
CTCCCCGTTAGTCGGCTGGCTTATGTTGTTGCCGGTTGCCCTTATTTGTCTGGTGGGGATAGGGCGGGCGCGGCGTCAAC
CGAACAGGGCATTCTCTGAACCGCTATTCTCCGGACTAGCATCCGAAAATCCGCTTCCACCTGAAAACCACCGTTTACCG
GTGGTGTTGGTCTGCGGTGATGGTCTGACGTCATTATTTGGCACCGAGAGGATGCTGCAGACTGCGCAAGGCTGCTGGCT
ACGAGTGGATGAGATAAACAGCCTACAACTGTTTACCCGACAGCTACTGTGGCAACGGCCGGAATGGGCCGCTCAGTTGG
CGGTGATGATGGTGGTGAACCCGCAGCAACGCAGCGATGAACGCCAGCTGGCAGCCGATTTACAGGAGCTGCGTTGGCAA
CTGATGCAACTGTGTAGCGATACCCGCCATCGCATTCCCTTACTGGTGAGTAGCACGGTGGCCACACTGATGGCCCATGA
TGCGGTTTGGTTGTCACAACAGCAAACTCCGCCGCTGACGCTCTGGTCAACCGTCTCGACGCCGGGATCTCTGGCCGACT
GGCAGCGCACACAAAGCAATGTTGTACAGGCGGAACGACTGAAACAGACGGTGTTGTTCAGCTGCCATCATGACTGGCTG
AAAGCACAAGTGCTCCCGGTGTTGCAGGCGCGCAATGAGGATGTGGCACCGGTCGCTGTACAGCAGATTATTCAGCAGCA
GGTTGCTGGTCTGCCAGATATAGAGCAAAGCTCCCTCTGGCAACATTGGCTAACCGCCCATACCTCGCTGACACAGGTGT
CCGGTTGGCATCCACCGTCGACGGCTGCGCATGACGTATTACCCTTGCCGGATTTTGTTTTTTCAGTGCTTCCCCTCGGC
AGTGGCGTGTCGTCACGCCGTCGGGTGCTGCGCCATAGCGTCACCTTACTGACGCTGGCGGCGATGGTGGCTTTGTGCAG
CAGTGCCTGGCAAAACCGGCAACTGTTGCAGCGGGTGACCTTTGATATCCGCCATTACTACAGCGTCGCCATGACCGATC
ACGCCCCTAAAGCGCAGGCCGTTGCGGTATTACGGGGTGATGCGGAGGAACTTGATAACGAGTTCCGCAATGGTGAGCCG
CTGCGTCTGGGACTGGGTTTGTATCAAGGATGGCGTCTGCGACTGCCTTTACTGGCCGCAGTGAAAACTTATGTGCCACC
ACCGCCTGCGATAGATAAAGAAACACCCACTACAGTCCGCCTTGATAGCCTGTCACTGTTTGATGTGGGCAAATTCCAGC
TCAAACCCGGCAGCATCAAGATGCTGGTTGATGCATTGATGAATATCAGAGCCAAACCCGGCTGGCTGATTGTGGTCGCC
GGGCATACCGACATTACCGGTGATGCACAGGCCAACCAAATTCTGTCGCTTAAGCGCGCCGAAGCATTACGCGACTGGAT
GCTATCAACCAGCGACGTCTCGCCGACCTGCTTTGCGGTGCAAGGCTACGGGGCGACACGCCCGGTCGCGACTAACGAGT
CAGCGGAAGGCCGCGCGGCCAACCGCCGTGTCGAAATTAGTCTGGTACCGCAGGCTGATGCCTGTCAGGTGCCAGAAACA
GTAAACCGGTCGCAGGAACACGCGACCTCACTCAGTAAGTAA