Detailed information of component protein


Summary

Component ID T6CP002210
Component protein type TssC
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (518 a.a.); Nucleotide sequence (1554 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05250
Coordinate (Strand) 933399..934952 (+)
NCBI ID WP_012104626.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.6e-122 94..392
VipB_2 PF18945.2 1.8e-39 402..512
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-517 MLMSVQENSAQGSATTVLEKNPAVAQGVYASLFEKINLNPVSSLAGLDAFQNSDALAEATTDERVTAAVSVFLDLLKQSSKKVEKLDKTLLDGHIAALDDQISRQLDAVMHHADFQRVESTWRGVKSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEIVQSGLYTQTYIQEYDTPGGEPIAAAISNYEFDRSPQDIALLRNISKVAAAAHMPFIGSVGPEFFGKENMEEVAAIKDIANYFDRAEYIKWKAFRDSDDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHDRYLWTNASFAFAANMVKSFIKNGWCVQIRGPQAGGAVTNLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYSCFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWIRGLVTEMTDPGDDLQASHPLRDAKVTVEDIEDNPGFFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9667 - -


  Protein sequence: 518 a.a.    

>T6CP002210 NC_009708:933399-934952 [Yersinia pseudotuberculosis IP 31758] [TssC]
MLMSVQENSAQGSATTVLEKNPAVAQGVYASLFEKINLNPVSSLAGLDAFQNSDALAEATTDERVTAAVSVFLDLLKQSS
KKVEKLDKTLLDGHIAALDDQISRQLDAVMHHADFQRVESTWRGVKSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEI
VQSGLYTQTYIQEYDTPGGEPIAAAISNYEFDRSPQDIALLRNISKVAAAAHMPFIGSVGPEFFGKENMEEVAAIKDIAN
YFDRAEYIKWKAFRDSDDSRYIGLTMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHDRYLWTNASFAFAANMVKSFIKNG
WCVQIRGPQAGGAVTNLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYSCFFSANSAQKPALYDTA
DATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWIRGLVTEMTDPGDDLQASHPLRDAKVTVEDI
EDNPGFFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA*

  Nucleotide sequence: 1554 bp    

>T6CP002210 NC_009708:933399-934952 [Yersinia pseudotuberculosis IP 31758] [TssC]
ATGCTGATGTCTGTACAGGAAAACAGTGCGCAGGGTAGTGCGACGACCGTGCTAGAGAAGAACCCTGCCGTAGCTCAAGG
GGTTTATGCCTCTTTATTTGAAAAGATCAACCTGAATCCCGTCTCCTCATTGGCTGGCCTTGACGCTTTCCAGAACAGTG
ATGCACTGGCGGAAGCGACTACGGATGAGCGCGTTACCGCCGCCGTCAGTGTCTTTTTAGACCTGCTGAAGCAATCGTCA
AAAAAAGTGGAGAAGCTGGATAAAACCTTGCTGGATGGTCACATTGCGGCACTGGATGACCAAATCAGTCGCCAGTTGGA
TGCGGTGATGCATCACGCTGATTTTCAACGTGTCGAGTCCACGTGGCGTGGTGTAAAATCCCTTATTGATCAAACCGACT
TCCGTCAAAATGTCCGTATTGAACTGCTGGATATCAGCAAGGATCATCTGGTACAGGATTTTGAAGACGCCCCTGAAATC
GTGCAAAGCGGTCTCTACACCCAGACCTACATTCAGGAATACGATACTCCCGGTGGCGAGCCAATTGCCGCGGCTATCTC
CAACTACGAGTTTGACCGCAGCCCGCAAGATATCGCCTTGTTGCGCAATATCTCCAAGGTGGCGGCGGCGGCTCACATGC
CATTTATCGGTTCTGTTGGTCCTGAGTTCTTTGGCAAAGAGAACATGGAAGAAGTGGCGGCCATCAAAGATATCGCTAAC
TACTTTGACCGTGCCGAATACATCAAGTGGAAAGCTTTCCGCGACTCGGATGATTCCCGCTATATCGGCTTGACCATGCC
GCGCGTGCTGGGGCGTTTGCCGTACGGGCCAGACACTGTGCCAGTGCGTAGCTTCAACTACGTTGAGCAGGTGAAAGGGC
CAGACCATGATCGCTATTTGTGGACCAATGCCTCGTTTGCCTTTGCTGCCAACATGGTGAAAAGCTTCATTAAAAATGGC
TGGTGCGTACAGATCCGTGGGCCACAAGCCGGTGGTGCAGTGACCAATCTGCCAATCCACCTGTATGACTTGGGTACCGG
TAATCAGGTCAAAATCCCGTCAGAAGTGATGATCCCGGAAACGCGCGAATTTGAGTTTGCCAACCTGGGCTTTATCCCGC
TGTCATACTACAAAAACCGTGATTACTCGTGCTTCTTCTCGGCTAACTCCGCCCAGAAACCGGCGCTGTATGATACCGCC
GATGCCACCGCCAACAGTCGCATCAATGCCCGTCTGCCGTATATCTTCCTGCTGTCACGCATTGCCCATTACCTGAAGTT
GATTCAGCGTGAAAACATTGGCACCACCAAAGATCGTCGTTTGCTGGAGCTGGAGCTGAATAACTGGATCCGTGGGCTAG
TCACTGAAATGACTGATCCGGGTGATGATTTACAGGCATCCCATCCACTGCGTGATGCGAAAGTCACGGTAGAAGATATC
GAAGACAACCCCGGCTTCTTCCGCGTCAAGCTGTATGCCGTGCCACATTTCCAGGTGGAAGGCATGGATGTGAATTTGTC
ATTGGTTTCCCAGATGCCGAAGGCGAAAGCCTGA