Detailed information of component protein


Summary

Component ID T6CP009358
Component protein type TssA
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (535 a.a.); Nucleotide sequence (1605 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05325
Coordinate (Strand) 958005..959609 (+)
NCBI ID WP_012104640.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 3.6e-79 230..490
ImpA_N PF06812.14 5.9e-22 33..138
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-534 MATLNTLITACAAVPDSLLLKAEQQVTLWDRWLQPVTTEQHSGEDLSYNDDFQQMREEVNKLSGADTTLASELAEKLLTLHGKDVRVATYYIWARLHRDGEAGLADGLALLAGLISRFGETLHPLRAASRKTALEWLSSSRVLDSLSLYPEVDNADFERIVGALALIEQSLSGWDDASRPQFGGLYLALEHRLAQSGGPNAVVPQNSSGSSSAGSQGQTAMVSPELRPVQSGRDLLDQAKTLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVSGRTRLVPPRPEYRVLLKRLYLQQNWLELLEQAESIFAEGVNHFWLDVQWYLHQALSKAGAPFDGWAACITQDLRLLLTRLPGLEGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVMASGEDDILLLEPEALAQADSEGIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSELDSRGALLTLPQWEPGLAFEVKARSLKLLRMKAQRSDSEKTRLHIEMESLLSGLMALDPARAAVLCG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7635 - -


  Protein sequence: 535 a.a.    

>T6CP009358 NC_009708:958005-959609 [Yersinia pseudotuberculosis IP 31758] [TssA]
MATLNTLITACAAVPDSLLLKAEQQVTLWDRWLQPVTTEQHSGEDLSYNDDFQQMREEVNKLSGADTTLASELAEKLLTL
HGKDVRVATYYIWARLHRDGEAGLADGLALLAGLISRFGETLHPLRAASRKTALEWLSSSRVLDSLSLYPEVDNADFERI
VGALALIEQSLSGWDDASRPQFGGLYLALEHRLAQSGGPNAVVPQNSSGSSSAGSQGQTAMVSPELRPVQSGRDLLDQAK
TLAKYLRNQPQGWLSGHHLIKSVRWDTVHQSPPLDVSGRTRLVPPRPEYRVLLKRLYLQQNWLELLEQAESIFAEGVNHF
WLDVQWYLHQALSKAGAPFDGWAACITQDLRLLLTRLPGLEGLCWSDGTPFADEVTLGWINQQVLESVSGWGSEPAAVMA
SGEDDILLLEPEALAQADSEGIEAALNWLQSRPGITTARHQWLLRLVMARVAEQYGKNDMALHLLSELDSRGALLTLPQW
EPGLAFEVKARSLKLLRMKAQRSDSEKTRLHIEMESLLSGLMALDPARAAVLCG*

  Nucleotide sequence: 1605 bp    

>T6CP009358 NC_009708:958005-959609 [Yersinia pseudotuberculosis IP 31758] [TssA]
ATGGCGACGTTAAATACCCTGATCACTGCCTGTGCCGCTGTCCCTGATTCACTGTTATTAAAGGCAGAACAACAGGTTAC
ACTTTGGGATCGCTGGTTGCAGCCGGTGACGACTGAACAGCACAGCGGAGAAGACCTCAGTTACAATGATGACTTCCAGC
AGATGCGTGAAGAGGTCAATAAGCTCTCGGGTGCTGATACCACGTTAGCCAGCGAGCTGGCAGAAAAACTGTTAACCCTG
CATGGCAAAGATGTGCGGGTGGCAACCTATTACATTTGGGCGCGTTTACACCGTGATGGCGAGGCTGGGCTGGCGGATGG
ACTGGCACTGCTGGCCGGGCTTATCAGCCGTTTTGGTGAAACCCTGCATCCGTTGCGCGCAGCCAGTCGGAAAACTGCGC
TGGAATGGCTATCGAGTTCTCGCGTGCTGGACAGTTTGTCGCTCTATCCTGAAGTGGATAATGCGGATTTTGAACGCATC
GTTGGCGCACTGGCGTTAATCGAACAGAGCCTCAGCGGCTGGGATGACGCATCCCGTCCGCAGTTTGGTGGATTGTATCT
TGCCTTGGAACATCGTCTGGCGCAGTCCGGTGGACCGAATGCGGTGGTGCCACAAAACAGCAGCGGGTCATCATCGGCAG
GGAGTCAGGGCCAGACGGCTATGGTTTCACCGGAGTTGCGGCCAGTCCAGTCGGGGCGTGACCTGCTCGACCAGGCTAAA
ACGTTAGCAAAATACCTGCGGAACCAGCCGCAGGGATGGCTCTCCGGGCATCATCTTATCAAGAGCGTGCGCTGGGATAC
GGTACACCAGTCACCGCCGTTGGATGTGAGTGGACGAACCCGACTGGTACCGCCGCGCCCGGAATATCGCGTGCTGCTTA
AGCGTCTTTATCTGCAACAAAACTGGCTGGAGTTGTTGGAACAGGCGGAATCGATATTTGCCGAAGGGGTCAACCATTTC
TGGCTCGATGTGCAGTGGTATCTGCATCAGGCACTCAGTAAAGCGGGAGCCCCATTCGATGGCTGGGCAGCTTGTATCAC
CCAGGATTTACGTCTGTTACTGACCCGGCTGCCCGGTCTGGAGGGGCTATGCTGGAGTGACGGCACGCCGTTTGCCGATG
AGGTGACGCTGGGGTGGATAAACCAGCAGGTGCTGGAGTCGGTGTCGGGCTGGGGCAGCGAGCCTGCCGCCGTGATGGCA
TCGGGCGAAGATGACATTCTGTTGCTGGAGCCAGAAGCTCTGGCTCAGGCGGACAGTGAAGGGATTGAAGCCGCACTTAA
CTGGTTGCAATCCCGTCCGGGTATTACCACTGCCCGCCATCAGTGGCTGCTGCGTTTGGTGATGGCCCGCGTGGCGGAGC
AGTACGGCAAGAACGATATGGCACTGCATCTGCTTAGTGAACTTGATAGCCGCGGTGCATTGCTAACCTTGCCGCAGTGG
GAGCCGGGGCTGGCGTTTGAAGTCAAAGCCCGAAGTCTGAAGCTGCTGCGGATGAAAGCACAACGCAGCGACAGTGAAAA
AACCCGCCTGCATATCGAAATGGAAAGCTTGCTCAGTGGGCTTATGGCCCTCGACCCGGCCCGTGCGGCCGTATTATGCG
GATAA