Detailed information of component protein


Summary

Component ID T6CP002215
Component protein type TssF
T6SS ID (Type) T6SS00222 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (588 a.a.); Nucleotide sequence (1764 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05340
Coordinate (Strand) 961400..963163 (+)
NCBI ID WP_012104643.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.7e-183 1..583
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-587 MDDLTLRYFDAEMRYLREAGEEFARAPPDRAAGLNLDKAGARDPYVERLFEGFAFLMGRMREKLDDDLPELTEGLVSLLWPHYLRTIPSLAIVEFTPQWQGMKERMGVSKGFEVLSRPIGERETRCRYTTTQDMDLLPLTLSRAKLDSEPDGRSVIRLRFDCSALADWSRINLSRLPLYFDADAPLACALHEALTLNTAKLWIRLPGQADRQPLDGHFAPLGFGEQDTLWPKADSAFSGYQLLLEYFTFREKFMFVALQGLDGIELPAELPWFEIDVVLEKRWQHDFSFSEKNLRLHCVPVINLFPLESDPLSLSSLQTEYLLRPMRIQDGYTEVYSVDSVISSRHTGHQVYVPFTSFRHKGGMLRHDAPEYYYHTRVKRGPSGLHDTWLVLGGEAFDNHSVPDNENLSLSLTGTNGQLPRKALQSTVLDTAVKSTGAQVRVRNLSAPSLPCYPPNRDRFHWRVLSHLGSSFLWMMDNAEVLRGTLALYDWTDNEMNRRRLEAIAEVKHSEIERFERGYLLRGVHIEITLDSNGFTGTGDICLFGEMLSRFFALYTDIHLFNRLTLILQPTGERLEWEENHTTRIPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9964 - -


  Protein sequence: 588 a.a.    

>T6CP002215 NC_009708:961400-963163 [Yersinia pseudotuberculosis IP 31758] [TssF]
MDDLTLRYFDAEMRYLREAGEEFARAPPDRAAGLNLDKAGARDPYVERLFEGFAFLMGRMREKLDDDLPELTEGLVSLLW
PHYLRTIPSLAIVEFTPQWQGMKERMGVSKGFEVLSRPIGERETRCRYTTTQDMDLLPLTLSRAKLDSEPDGRSVIRLRF
DCSALADWSRINLSRLPLYFDADAPLACALHEALTLNTAKLWIRLPGQADRQPLDGHFAPLGFGEQDTLWPKADSAFSGY
QLLLEYFTFREKFMFVALQGLDGIELPAELPWFEIDVVLEKRWQHDFSFSEKNLRLHCVPVINLFPLESDPLSLSSLQTE
YLLRPMRIQDGYTEVYSVDSVISSRHTGHQVYVPFTSFRHKGGMLRHDAPEYYYHTRVKRGPSGLHDTWLVLGGEAFDNH
SVPDNENLSLSLTGTNGQLPRKALQSTVLDTAVKSTGAQVRVRNLSAPSLPCYPPNRDRFHWRVLSHLGSSFLWMMDNAE
VLRGTLALYDWTDNEMNRRRLEAIAEVKHSEIERFERGYLLRGVHIEITLDSNGFTGTGDICLFGEMLSRFFALYTDIHL
FNRLTLILQPTGERLEWEENHTTRIPG*

  Nucleotide sequence: 1764 bp    

>T6CP002215 NC_009708:961400-963163 [Yersinia pseudotuberculosis IP 31758] [TssF]
ATGGACGACTTAACCCTGCGTTATTTTGACGCTGAAATGCGCTACCTGCGTGAAGCGGGCGAAGAGTTTGCCCGCGCGCC
CCCTGATCGGGCTGCCGGATTAAATCTGGATAAAGCCGGGGCGCGTGACCCCTATGTGGAACGCCTGTTTGAAGGCTTTG
CCTTCCTGATGGGCCGCATGCGAGAAAAACTGGATGATGACCTGCCGGAGCTGACCGAAGGGTTGGTCAGCCTGCTGTGG
CCGCACTACCTGCGCACCATTCCGTCGCTTGCCATTGTGGAGTTCACCCCACAATGGCAGGGGATGAAAGAACGCATGGG
GGTGAGCAAAGGTTTTGAAGTGCTTTCCCGCCCCATTGGCGAGCGTGAAACCCGTTGCCGCTACACCACCACGCAGGATA
TGGACTTGCTCCCGCTGACATTGAGCCGAGCCAAATTGGACAGTGAACCCGATGGCCGGTCGGTTATCCGGCTGCGCTTT
GATTGCAGCGCGCTGGCCGACTGGAGCCGTATCAACCTGAGCCGCCTGCCGCTCTATTTTGATGCCGATGCGCCGCTGGC
CTGCGCCCTGCATGAGGCGCTGACCCTGAATACCGCCAAACTCTGGATCCGGTTGCCGGGGCAGGCTGATCGCCAGCCGC
TGGACGGCCATTTCGCGCCGCTGGGGTTCGGGGAGCAGGATACACTGTGGCCGAAGGCCGACAGTGCGTTCAGTGGTTAT
CAGCTCTTGCTGGAGTACTTTACCTTCCGCGAAAAGTTTATGTTTGTCGCGTTGCAGGGGCTGGATGGGATCGAGCTGCC
GGCGGAACTGCCGTGGTTTGAGATTGATGTGGTGCTGGAAAAACGCTGGCAACATGATTTCTCGTTCTCCGAAAAGAACC
TGCGCCTGCATTGTGTGCCGGTGATTAACCTGTTCCCGCTGGAATCGGACCCGCTGTCACTTTCTTCATTACAGACCGAA
TACCTGCTGCGCCCAATGCGCATTCAGGACGGTTATACCGAAGTGTATTCGGTGGACTCGGTGATCTCCTCGCGTCATAC
CGGGCATCAGGTCTATGTCCCGTTCACCAGTTTTCGCCATAAAGGCGGGATGCTGCGCCATGATGCGCCGGAATATTACT
ACCATACGCGGGTCAAACGCGGGCCTTCGGGGTTGCACGATACCTGGCTGGTGCTGGGGGGCGAGGCGTTTGATAACCAC
AGCGTCCCGGATAATGAAAATTTGTCGCTGAGCCTGACCGGCACTAACGGGCAGTTACCGCGTAAAGCGCTGCAAAGCAC
GGTGCTGGATACGGCGGTGAAATCCACCGGGGCTCAGGTGCGGGTGCGTAATCTCTCCGCGCCGTCATTGCCATGCTACC
CGCCGAACCGCGACCGTTTTCACTGGCGGGTGTTGAGCCATCTGGGCAGCAGTTTTCTGTGGATGATGGATAACGCTGAA
GTGCTGCGCGGAACGCTGGCGCTGTATGACTGGACGGACAACGAAATGAACCGCCGTCGGCTGGAGGCTATCGCTGAGGT
CAAACACAGCGAGATTGAACGCTTTGAACGGGGTTACTTGCTGCGCGGGGTACACATTGAAATCACCCTCGACAGTAACG
GCTTTACCGGTACCGGGGATATTTGTCTGTTTGGGGAAATGCTCAGTCGCTTCTTTGCCCTGTATACCGATATTCATCTG
TTTAATCGCCTGACTCTGATACTGCAACCGACAGGAGAACGTTTGGAATGGGAAGAGAATCACACGACCCGAATTCCCGG
CTGA