Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00072  |
| T6SS type | Type i3 |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon (RefSeq) | chromosome II (NC_006351) |
| Location | 115016..146918 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagJ | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BPS_RS19070 | 110182..110727 | + | 546 | WP_011205334.1 | type 1 fimbrial protein | ||
| BPS_RS19075 | 110807..111529 | + | 723 | WP_004523705.1 | fimbria/pilus periplasmic chaperone | ||
| BPS_RS19080 | 111642..114386 | + | 2745 | WP_045606153.1 | fimbrial biogenesis outer membrane usher protein | ||
| BPS_RS19085 | 114379..114951 | + | 573 | WP_004529637.1 | type 1 fimbrial protein | ||
| T6CP009347 | TssL | BPS_RS19090 | 114983..115672 | + | 690 | WP_045606155.1 | DotU family type IV/VI secretion system protein |
| T6CP011467 | TagL | BPS_RS19095 | 115675..117351 | + | 1677 | WP_011205338.1 | OmpA family protein |
| T6CP000625 | TssB | BPS_RS19100 (tssB) | 117729..118268 | + | 540 | WP_004523700.1 | type VI secretion system contractile sheath small subunit |
| T6CP000626 | TssC | BPS_RS19105 (tssC) | 118302..119801 | + | 1500 | WP_004523699.1 | type VI secretion system contractile sheath large subunit |
| T6CP000627 | TssD | BPS_RS19110 | 120001..120483 | + | 483 | WP_004551170.1 | type VI secretion system tube protein Hcp |
| T6CP000628 | TssJ | BPS_RS19115 (tssJ) | 120611..121153 | + | 543 | WP_004551171.1 | type VI secretion system lipoprotein TssJ |
| T6CP000629 | TssK | BPS_RS19120 (tssK) | 121159..122508 | + | 1350 | WP_004523698.1 | type VI secretion system baseplate subunit TssK |
| T6CP000630 | TssL | BPS_RS19125 (tssL) | 122505..123806 | + | 1302 | WP_004556024.1 | type VI secretion system protein TssL, long form |
| T6CP000631 | TssM | BPS_RS19130 (tssM) | 123821..127729 | + | 3909 | WP_004551174.1 | type VI secretion system membrane subunit TssM |
| BPS_RS19135 | 127919..128488 | + | 570 | WP_004529647.1 | hypothetical protein | ||
| T6CP000632 | TssI | BPS_RS19140 (tssI) | 128586..131252 | + | 2667 | WP_045606158.1 | type VI secretion system tip protein VgrG |
| BPS_RS19145 | 131327..131596 | + | 270 | WP_004523693.1 | PAAR domain-containing protein | ||
| BPS_RS19150 | 131609..135061 | + | 3453 | WP_004556559.1 | RHS repeat protein | ||
| BPS_RS19155 | 134954..136312 | - | 1359 | WP_011205341.1 | hypothetical protein | ||
| BPS_RS19160 | 136345..137373 | - | 1029 | WP_004536657.1 | fimbrial protein | ||
| T6CP000633 | TssA | BPS_RS19165 | 137428..138498 | - | 1071 | WP_011205342.1 | type VI secretion system ImpA family N-terminal domain-containing protein |
| T6CP000634 | TssG | BPS_RS19170 (tssG) | 138517..139566 | - | 1050 | WP_011205343.1 | type VI secretion system baseplate subunit TssG |
| T6CP000635 | TssF | BPS_RS19175 (tssF) | 139563..141443 | - | 1881 | WP_004523687.1 | type VI secretion system baseplate subunit TssF |
| T6CP000636 | TssE | BPS_RS19180 (tssE) | 141445..141963 | - | 519 | WP_004523686.1 | type VI secretion system baseplate subunit TssE |
| T6CP012711 | TagJ | BPS_RS19185 | 141950..142756 | - | 807 | WP_004523685.1 | ImpE/SciE family protein |
| BPS_RS19190 | 142788..143771 | - | 984 | WP_004523684.1 | TagK domain-containing protein | ||
| T6CP000637 | TssH | BPS_RS19195 (tssH) | 144273..146918 | + | 2646 | WP_009939095.1 | type VI secretion system ATPase TssH |
| BPS_RS19200 | 147309..150353 | - | 3045 | WP_011205345.1 | hybrid sensor histidine kinase/response regulator | ||
| BPS_RS32120 | 151139..151360 | - | 222 | WP_160469059.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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