Detailed information of component protein


Summary

Component ID T6CP000632
Component protein type TssI
T6SS ID (Type) T6SS00072 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (889 a.a.); Nucleotide sequence (2667 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19140
Coordinate (Strand) 128586..131252 (+)
NCBI ID WP_045606158.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.2e-91 41..368
Phage_base_V PF04717.14 2.7e-13 425..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-888 MPNHFSNGRTNQSRTVVIRSGAMPRLLGQPALEFLSLRGEEHLGKLYTYELLLRTPDDFHVPLATSANLDLKAMIGTEMTVCIQLDGIGTGAQGGVGAGAREISGLVVKAGFLRCEGRYNVYRIELRPWLWLATLTSDYKIFQDKSVVEIIDTVLHDYPYPVEKRLDIDKYSVAGESARNEPRAFQVQYGETDFDFVQRLMEEWGIYWFFEHSDNKHRLVLCDHIGGHRKAPSEAYHEIAHHPEGGKIDIEYINYFSTDEALRPGRVVIDDFDFTRPLASLVTSNHQPRETNWGEGELFEWPGDYTDSKHGDLISRVRMEERRATGSRAYGRGNVRGLACGHTFVLSKHKHDGANREYLVIESALMLTEVADETGSGYRYECDNELVVQPSNEVFRMPRETPKPTTSGPQSAIVVGPPGHEVWTDEFGRVKIRFLWDRYARNDATDSCWVRVSQAWAGVNFGGIYIPRIGQEVIVGFMNGDPDRPLILGSLYNTITPPPWDLPGDATKSGFKSKSITGGRENYNGIRFEDKLGAEEFHMQAEKDMNRLTKNDESHTVGANFSIGVGLTHTRAVGAMFSSIVGGAASYAVGGAESTMIGGAYALNVGGAHAVAVGGASSVSVGGAYARNVGGAYALTVGGVLSIVCGASSITMTACGSIKLVGKNIRIIGSDEVVVQGAPLQLNPGDSDCGGGGGGGGGGGAIPPIPLPSFFLDITKPILPPPPPPPTEVPPDPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPMPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTSSEI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9933 - -


  Protein sequence: 889 a.a.    

>T6CP000632 NC_006351:128586-131252 [Burkholderia pseudomallei K96243] [TssI]
MPNHFSNGRTNQSRTVVIRSGAMPRLLGQPALEFLSLRGEEHLGKLYTYELLLRTPDDFHVPLATSANLDLKAMIGTEMT
VCIQLDGIGTGAQGGVGAGAREISGLVVKAGFLRCEGRYNVYRIELRPWLWLATLTSDYKIFQDKSVVEIIDTVLHDYPY
PVEKRLDIDKYSVAGESARNEPRAFQVQYGETDFDFVQRLMEEWGIYWFFEHSDNKHRLVLCDHIGGHRKAPSEAYHEIA
HHPEGGKIDIEYINYFSTDEALRPGRVVIDDFDFTRPLASLVTSNHQPRETNWGEGELFEWPGDYTDSKHGDLISRVRME
ERRATGSRAYGRGNVRGLACGHTFVLSKHKHDGANREYLVIESALMLTEVADETGSGYRYECDNELVVQPSNEVFRMPRE
TPKPTTSGPQSAIVVGPPGHEVWTDEFGRVKIRFLWDRYARNDATDSCWVRVSQAWAGVNFGGIYIPRIGQEVIVGFMNG
DPDRPLILGSLYNTITPPPWDLPGDATKSGFKSKSITGGRENYNGIRFEDKLGAEEFHMQAEKDMNRLTKNDESHTVGAN
FSIGVGLTHTRAVGAMFSSIVGGAASYAVGGAESTMIGGAYALNVGGAHAVAVGGASSVSVGGAYARNVGGAYALTVGGV
LSIVCGASSITMTACGSIKLVGKNIRIIGSDEVVVQGAPLQLNPGDSDCGGGGGGGGGGGAIPPIPLPSFFLDITKPILP
PPPPPPTEVPPDPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT
PTPTPTPTPTPMPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT
PTPTSSEI*

  Nucleotide sequence: 2667 bp    

>T6CP000632 NC_006351:128586-131252 [Burkholderia pseudomallei K96243] [TssI]
ATGCCAAACCATTTTTCGAACGGACGGACGAATCAAAGCCGCACGGTAGTGATCCGCAGCGGTGCGATGCCGCGGCTGCT
CGGTCAGCCCGCGCTCGAGTTCCTGTCGCTGCGCGGTGAAGAGCACCTCGGAAAACTCTACACGTACGAATTGCTCCTGC
GCACGCCGGACGATTTTCATGTGCCGTTGGCAACGAGCGCGAATCTCGACCTGAAGGCGATGATCGGCACGGAGATGACG
GTCTGCATTCAGCTCGACGGAATCGGGACGGGCGCGCAAGGCGGCGTTGGCGCGGGTGCGCGCGAAATCAGCGGGCTCGT
GGTCAAGGCGGGCTTCCTGCGCTGCGAGGGGCGCTACAACGTCTATCGCATCGAGCTGCGCCCCTGGCTGTGGCTCGCGA
CTTTGACGAGCGACTACAAGATTTTTCAGGACAAGAGCGTCGTCGAAATCATCGATACGGTCTTGCACGATTACCCTTAC
CCGGTCGAGAAGCGGCTCGACATCGACAAGTATTCGGTGGCGGGCGAGAGCGCTCGAAACGAGCCGCGCGCGTTCCAGGT
GCAATATGGCGAAACCGACTTCGACTTCGTTCAGCGTTTGATGGAGGAGTGGGGGATCTACTGGTTCTTCGAGCATTCGG
ACAACAAGCATCGCCTGGTCTTGTGCGATCACATCGGCGGACATCGCAAGGCGCCGAGCGAGGCCTATCACGAGATCGCG
CATCACCCGGAAGGCGGGAAGATCGACATCGAGTACATCAACTATTTCTCGACGGACGAAGCGCTGCGGCCCGGCCGCGT
CGTGATAGACGATTTCGACTTCACGCGTCCGCTCGCGAGCCTCGTCACGTCCAATCACCAGCCGCGGGAGACGAACTGGG
GGGAGGGCGAGCTGTTCGAATGGCCGGGCGACTATACCGATAGCAAGCATGGCGATCTCATCAGCCGCGTGCGCATGGAA
GAGCGCCGCGCGACCGGGTCGCGCGCATACGGTCGGGGCAACGTGCGCGGCCTCGCCTGCGGTCATACGTTCGTGCTGTC
GAAGCACAAGCACGACGGCGCGAACCGCGAGTACCTCGTCATCGAATCGGCGTTGATGCTGACCGAAGTCGCGGACGAAA
CGGGCAGCGGCTACCGCTACGAATGCGATAACGAACTGGTCGTGCAGCCGTCGAACGAGGTGTTTCGAATGCCGCGCGAA
ACGCCCAAGCCGACGACGAGCGGGCCACAGTCCGCGATCGTGGTCGGGCCGCCGGGCCACGAGGTATGGACCGACGAATT
CGGCCGCGTGAAGATCCGTTTTCTGTGGGATCGCTACGCACGCAATGACGCAACGGATTCCTGCTGGGTACGCGTGAGCC
AGGCGTGGGCCGGCGTGAACTTCGGCGGCATCTACATTCCGCGGATCGGACAGGAAGTGATCGTCGGATTCATGAACGGC
GATCCGGACCGTCCGCTGATTCTCGGCAGCCTCTACAACACCATTACGCCGCCGCCTTGGGATCTGCCCGGCGACGCGAC
GAAGAGCGGATTCAAGAGCAAGTCGATCACGGGCGGGCGCGAGAACTATAACGGCATCCGCTTCGAGGACAAGCTGGGAG
CCGAGGAATTTCACATGCAGGCGGAAAAGGACATGAACCGCCTGACGAAGAACGACGAGTCGCATACGGTCGGCGCGAAT
TTTTCGATCGGCGTCGGGCTTACCCATACGCGCGCGGTGGGCGCCATGTTCAGCAGCATCGTCGGCGGAGCCGCCAGCTA
TGCGGTGGGGGGCGCGGAATCGACGATGATCGGCGGCGCGTATGCGTTGAACGTCGGCGGCGCGCACGCGGTTGCGGTGG
GCGGCGCGTCGTCCGTTTCCGTTGGCGGCGCCTACGCGCGCAACGTGGGCGGCGCGTATGCGCTGACAGTCGGCGGCGTG
CTGTCGATCGTCTGCGGTGCGTCTTCGATCACCATGACGGCTTGCGGCTCGATCAAGCTCGTCGGCAAGAATATTCGCAT
CATCGGCAGCGACGAAGTCGTCGTGCAAGGCGCGCCCCTGCAGCTGAATCCGGGCGATTCGGATTGCGGCGGAGGGGGAG
GCGGCGGCGGCGGCGGCGGCGCGATTCCGCCGATTCCGTTGCCGTCGTTCTTCCTCGATATCACGAAGCCGATTCTTCCG
CCGCCGCCGCCGCCACCGACGGAGGTGCCACCGGATCCGACGCCGACGCCAACGCCGACGCCGACGCCCACGCCCACGCC
GACGCCCACGCCGACGCCGACGCCGACGCCGACGCCGACGCCCACGCCGACGCCCACGCCGACGCCGACGCCGACGCCGA
CGCCCACGCCGACGCCCACGCCGACGCCCACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACG
CCAACGCCAACGCCGACGCCGACGCCGACGCCAATGCCGACGCCAACGCCAACGCCGACGCCGACGCCCACGCCTACGCC
CACGCCGACGCCGACGCCGACGCCGACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCGACGCCGACGCCGA
CGCCCACGCCAACGCCGACGCCAACGCCAACGCCGACGCCCACGCCGACGCCGACGCCAACACCAACACCAACACCAACA
CCAACTCCGACTAGTTCCGAGATTTAA