SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000633
Component protein type	TssA
T6SS ID (Type)	T6SS00072 (Type i3)
Strain	Burkholderia pseudomallei K96243
Replicon	chromosome II
Sequence	Protein sequence (357 a.a.); Nucleotide sequence (1071 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	BPS_RS19165
Coordinate (Strand)	137428..138498 (-)
NCBI ID	WP_011205342.1
RefSeq	NC_006351
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
ImpA_N	PF06812.14	4.6e-33	16..139

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-356	MNATPSAAALRYADLLEPVSPDAPCGPDLEYDPAFVMLQSAIAPRKDAQYGEFVEAPQPANWAEAERDCLALLLRTKDIRLVVILMRCRIRQSGAEGLRDGLTLLNELLARYGEALHPVPFFEGERDPVVYANAIATLADPDATLADIREIPLPKASGLQLQLRDIEKALAVTRVKDALAPESASRLLKEWWNRRDKTIAALAQAQRIVADLIASTRESLGDDAPDLSGIAKLLHPFAQAQLESPYSANAAQPQGDAKPATGDAAHARAADTSAQAGDTDTQAPAAMPIAPAQPPMDRWGALAAIQATRLWFEQNEPSSPVIVLLRQSERMVGKRFSEIANAIPAELLAQWDAIDV

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9000	-	-

Protein sequence: 357 a.a.

						>T6CP000633 NC_006351:c138498-137428 [Burkholderia pseudomallei K96243] [TssA]
MNATPSAAALRYADLLEPVSPDAPCGPDLEYDPAFVMLQSAIAPRKDAQYGEFVEAPQPANWAEAERDCLALLLRTKDIR
LVVILMRCRIRQSGAEGLRDGLTLLNELLARYGEALHPVPFFEGERDPVVYANAIATLADPDATLADIREIPLPKASGLQ
LQLRDIEKALAVTRVKDALAPESASRLLKEWWNRRDKTIAALAQAQRIVADLIASTRESLGDDAPDLSGIAKLLHPFAQA
QLESPYSANAAQPQGDAKPATGDAAHARAADTSAQAGDTDTQAPAAMPIAPAQPPMDRWGALAAIQATRLWFEQNEPSSP
VIVLLRQSERMVGKRFSEIANAIPAELLAQWDAIDV*					

Nucleotide sequence: 1071 bp

						>T6CP000633 NC_006351:c138498-137428 [Burkholderia pseudomallei K96243] [TssA]
ATGAATGCCACCCCATCCGCCGCCGCGCTGCGCTATGCGGATCTTCTCGAGCCCGTCTCGCCGGACGCACCCTGCGGGCC
GGACCTCGAATACGATCCGGCGTTCGTGATGCTGCAATCCGCGATCGCGCCGAGGAAAGATGCGCAATATGGCGAGTTCG
TCGAAGCGCCTCAGCCCGCGAACTGGGCGGAGGCCGAACGCGATTGCCTCGCGCTGCTGCTGCGCACGAAAGACATCCGG
CTCGTCGTGATCCTGATGCGATGCCGAATCCGCCAGAGCGGCGCGGAGGGCCTGCGCGACGGCCTCACGCTGCTCAACGA
GTTGCTCGCACGCTACGGTGAGGCACTGCACCCCGTACCGTTCTTCGAAGGCGAACGCGATCCCGTGGTCTATGCGAATG
CGATCGCCACGCTGGCGGACCCCGATGCGACGCTCGCGGATATTCGGGAAATCCCGTTGCCCAAGGCGAGCGGCCTGCAA
TTGCAGTTGCGCGACATCGAAAAGGCGCTCGCGGTGACGCGCGTGAAAGACGCACTCGCGCCCGAATCGGCCAGCCGGCT
GCTGAAGGAATGGTGGAATCGGCGCGACAAGACGATCGCGGCGCTCGCGCAAGCCCAGCGCATCGTGGCCGATCTGATCG
CGTCGACCCGCGAGTCGCTCGGCGACGACGCGCCCGACCTGTCCGGCATCGCGAAACTGCTGCATCCGTTTGCGCAAGCG
CAACTGGAATCGCCGTATTCGGCAAACGCCGCTCAACCGCAAGGCGACGCGAAGCCGGCGACCGGCGACGCCGCGCATGC
GCGCGCCGCCGATACGTCCGCCCAGGCAGGCGATACCGACACGCAAGCGCCCGCTGCGATGCCGATCGCGCCTGCCCAAC
CGCCGATGGATCGCTGGGGCGCGCTGGCGGCCATTCAGGCGACGCGCCTTTGGTTCGAGCAGAACGAGCCGAGCAGCCCG
GTGATCGTGCTGCTGCGCCAGTCGGAGCGGATGGTCGGCAAGCGCTTTTCGGAAATCGCCAATGCGATTCCCGCCGAACT
GCTCGCGCAATGGGATGCGATCGACGTCTAG					