Detailed information of component protein
Summary
| Component ID | T6CP012711 |
| Component protein type | TagJ |
| T6SS ID (Type) | T6SS00072  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (269 a.a.); Nucleotide sequence (807 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BPS_RS19185 |
| Coordinate (Strand) | 141950..142756 (-) |
| NCBI ID | WP_004523685.1 |
| RefSeq | NC_006351 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 5.3e-40 | 140..257 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-268 | MLRDALRAQSFEEIKARTAEAVRKRPSDTRERWLLFQLLCIDGAWERALKQLQTWAGLEPQGEARAQLHRGLIRCEMFRADVFAGKRTPGFIDAQPAWVDTLLQANAKLGAGDVAAADTLREAAFHCAPVTRGESAEMGSFAWLTDSDTRLGPIFEIAVAGGYRWIPFEQLKSITFTPAGTLTDLVWRPVTALMLDATVLRGYAPTRYSGSENGATAIRLASETTWRDIGTTNVVALGQRTWTTDQGDWGMLQIGGCRFTGESDDAAS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9895 | - | - |
Protein sequence: 269 a.a.
>T6CP012711 NC_006351:c142756-141950 [Burkholderia pseudomallei K96243] [TagJ]
MLRDALRAQSFEEIKARTAEAVRKRPSDTRERWLLFQLLCIDGAWERALKQLQTWAGLEPQGEARAQLHRGLIRCEMFRA
DVFAGKRTPGFIDAQPAWVDTLLQANAKLGAGDVAAADTLREAAFHCAPVTRGESAEMGSFAWLTDSDTRLGPIFEIAVA
GGYRWIPFEQLKSITFTPAGTLTDLVWRPVTALMLDATVLRGYAPTRYSGSENGATAIRLASETTWRDIGTTNVVALGQR
TWTTDQGDWGMLQIGGCRFTGESDDAAS*
MLRDALRAQSFEEIKARTAEAVRKRPSDTRERWLLFQLLCIDGAWERALKQLQTWAGLEPQGEARAQLHRGLIRCEMFRA
DVFAGKRTPGFIDAQPAWVDTLLQANAKLGAGDVAAADTLREAAFHCAPVTRGESAEMGSFAWLTDSDTRLGPIFEIAVA
GGYRWIPFEQLKSITFTPAGTLTDLVWRPVTALMLDATVLRGYAPTRYSGSENGATAIRLASETTWRDIGTTNVVALGQR
TWTTDQGDWGMLQIGGCRFTGESDDAAS*
Nucleotide sequence: 807 bp
>T6CP012711 NC_006351:c142756-141950 [Burkholderia pseudomallei K96243] [TagJ]
ATGCTGCGCGACGCGCTGCGCGCCCAGTCTTTCGAGGAAATCAAGGCGCGCACGGCCGAGGCGGTCAGAAAGCGGCCATC
CGACACGCGGGAACGCTGGCTACTGTTTCAGTTGCTTTGCATCGACGGCGCGTGGGAGCGCGCGCTCAAACAGCTGCAAA
CCTGGGCCGGGCTCGAGCCGCAGGGCGAGGCGCGCGCGCAACTGCATCGCGGCCTGATCCGATGCGAAATGTTCCGGGCC
GACGTGTTTGCCGGCAAGCGAACGCCGGGGTTCATCGACGCGCAGCCCGCCTGGGTCGACACGCTCCTCCAAGCCAATGC
GAAGCTCGGCGCCGGCGACGTCGCGGCGGCGGACACGCTGCGCGAAGCCGCGTTCCACTGCGCCCCTGTCACCCGCGGGG
AAAGCGCCGAAATGGGAAGCTTCGCATGGCTTACCGACAGCGACACCCGCCTCGGTCCGATCTTTGAAATAGCGGTTGCA
GGCGGCTATCGATGGATTCCGTTCGAACAACTGAAGTCCATCACGTTTACGCCCGCCGGCACGCTGACCGACCTGGTCTG
GCGACCGGTCACGGCACTCATGCTCGATGCCACGGTTCTCCGCGGCTATGCACCCACCCGCTATTCGGGATCGGAGAACG
GCGCGACCGCGATCCGCTTGGCCAGCGAGACGACCTGGCGCGACATCGGCACCACCAACGTCGTGGCGCTCGGACAACGA
ACATGGACCACCGATCAGGGCGACTGGGGCATGCTCCAGATCGGCGGATGCCGCTTCACGGGCGAAAGCGACGATGCGGC
ATCCTGA
ATGCTGCGCGACGCGCTGCGCGCCCAGTCTTTCGAGGAAATCAAGGCGCGCACGGCCGAGGCGGTCAGAAAGCGGCCATC
CGACACGCGGGAACGCTGGCTACTGTTTCAGTTGCTTTGCATCGACGGCGCGTGGGAGCGCGCGCTCAAACAGCTGCAAA
CCTGGGCCGGGCTCGAGCCGCAGGGCGAGGCGCGCGCGCAACTGCATCGCGGCCTGATCCGATGCGAAATGTTCCGGGCC
GACGTGTTTGCCGGCAAGCGAACGCCGGGGTTCATCGACGCGCAGCCCGCCTGGGTCGACACGCTCCTCCAAGCCAATGC
GAAGCTCGGCGCCGGCGACGTCGCGGCGGCGGACACGCTGCGCGAAGCCGCGTTCCACTGCGCCCCTGTCACCCGCGGGG
AAAGCGCCGAAATGGGAAGCTTCGCATGGCTTACCGACAGCGACACCCGCCTCGGTCCGATCTTTGAAATAGCGGTTGCA
GGCGGCTATCGATGGATTCCGTTCGAACAACTGAAGTCCATCACGTTTACGCCCGCCGGCACGCTGACCGACCTGGTCTG
GCGACCGGTCACGGCACTCATGCTCGATGCCACGGTTCTCCGCGGCTATGCACCCACCCGCTATTCGGGATCGGAGAACG
GCGCGACCGCGATCCGCTTGGCCAGCGAGACGACCTGGCGCGACATCGGCACCACCAACGTCGTGGCGCTCGGACAACGA
ACATGGACCACCGATCAGGGCGACTGGGGCATGCTCCAGATCGGCGGATGCCGCTTCACGGGCGAAAGCGACGATGCGGC
ATCCTGA