Detailed information of component protein


Summary

Component ID T6CP000629
Component protein type TssK
T6SS ID (Type) T6SS00072 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (450 a.a.); Nucleotide sequence (1350 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19120
Coordinate (Strand) 121159..122508 (+)
NCBI ID WP_004523698.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.3e-142 20..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-449 MSWHNKVVWNEGLFLLPQLFQQQERYFEYFAHKRAAVLSPFFWGFSRYEIDQESLSFGKLVFKSGAGIFPDGTPFDVPGHTPPPPPLTIAAEHQDQVIYLAVPLRLPNTEETAFDEQAGSLARYSAFEIELRDSNAIGQGPKPVQLANMRLRLLPEKELTQSWIGIALTRVKTLHADGSVALYDGDHIPPVSQYGANPLLREWATQLHGLAKLRADALATRLSGSDGRAGAAAEVADYLLLQVLNRYEPLLEHICRIREMPPVTLYRELSMLAGELSTFVRPQTRRPRPTPGYDHAQLYASIRPLVDEVHYLLNQVLIRGAQPIPLTEQPHGIRVATMLPSELAGYSSLVLAVGAQMSPDVLQQQFASQTKISHPQRLPELIRSHLPGMTMIPLPVPPRQIPFNSSYIYYELSRTGPFWEQIAQQGGLAMHIAGHFPELKLELWGVRHK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9942 - -


  Protein sequence: 450 a.a.    

>T6CP000629 NC_006351:121159-122508 [Burkholderia pseudomallei K96243] [TssK]
MSWHNKVVWNEGLFLLPQLFQQQERYFEYFAHKRAAVLSPFFWGFSRYEIDQESLSFGKLVFKSGAGIFPDGTPFDVPGH
TPPPPPLTIAAEHQDQVIYLAVPLRLPNTEETAFDEQAGSLARYSAFEIELRDSNAIGQGPKPVQLANMRLRLLPEKELT
QSWIGIALTRVKTLHADGSVALYDGDHIPPVSQYGANPLLREWATQLHGLAKLRADALATRLSGSDGRAGAAAEVADYLL
LQVLNRYEPLLEHICRIREMPPVTLYRELSMLAGELSTFVRPQTRRPRPTPGYDHAQLYASIRPLVDEVHYLLNQVLIRG
AQPIPLTEQPHGIRVATMLPSELAGYSSLVLAVGAQMSPDVLQQQFASQTKISHPQRLPELIRSHLPGMTMIPLPVPPRQ
IPFNSSYIYYELSRTGPFWEQIAQQGGLAMHIAGHFPELKLELWGVRHK*

  Nucleotide sequence: 1350 bp    

>T6CP000629 NC_006351:121159-122508 [Burkholderia pseudomallei K96243] [TssK]
ATGAGTTGGCATAACAAAGTGGTGTGGAACGAAGGACTGTTTCTTCTTCCCCAGCTGTTTCAACAACAGGAACGGTATTT
CGAATATTTCGCGCACAAGCGGGCCGCGGTCCTCAGCCCGTTTTTCTGGGGATTCAGCCGATACGAAATCGATCAGGAGT
CGCTATCGTTCGGCAAGCTCGTGTTCAAGAGCGGTGCGGGAATATTTCCCGACGGAACGCCGTTCGACGTGCCGGGGCAC
ACGCCGCCGCCGCCGCCGCTGACGATTGCCGCCGAGCATCAGGATCAGGTGATTTATCTCGCGGTGCCGCTGCGTCTGCC
GAATACGGAGGAGACCGCGTTCGACGAACAAGCGGGATCGCTTGCGCGCTATTCGGCGTTCGAGATCGAATTGCGCGACA
GCAATGCGATCGGTCAAGGGCCCAAGCCGGTACAGCTCGCGAACATGCGGCTGCGCCTGCTGCCGGAAAAGGAGCTGACG
CAGTCCTGGATCGGTATTGCCTTGACGCGCGTGAAGACGCTTCACGCCGACGGTTCGGTCGCGCTGTACGACGGTGACCA
CATCCCGCCCGTCAGCCAGTACGGAGCGAACCCGCTGCTGCGCGAATGGGCGACCCAGTTGCACGGCCTCGCGAAACTGC
GAGCCGACGCGCTGGCGACGCGCCTGTCCGGCAGCGATGGCCGGGCCGGGGCGGCGGCCGAGGTGGCGGATTATTTGTTG
CTGCAGGTGCTGAACCGGTATGAACCGCTGCTCGAGCACATCTGCAGGATTCGCGAAATGCCGCCCGTCACGCTCTATCG
CGAGCTGTCGATGCTGGCAGGCGAATTGTCGACGTTCGTGCGCCCGCAAACGCGCCGTCCGCGGCCGACGCCCGGTTACG
ATCATGCGCAGTTGTATGCGAGCATTCGCCCGCTGGTCGACGAGGTGCACTACCTGTTGAACCAGGTTCTGATTCGAGGC
GCGCAGCCGATCCCGCTCACCGAGCAGCCGCACGGCATTCGCGTGGCCACGATGTTGCCGTCGGAACTCGCGGGCTATTC
GAGCCTCGTGCTCGCCGTGGGCGCGCAAATGTCGCCGGACGTGTTGCAGCAGCAGTTCGCATCCCAGACGAAGATCAGCC
ATCCGCAGCGGCTGCCGGAGCTCATTCGCTCTCATTTGCCGGGCATGACGATGATTCCGTTGCCGGTGCCTCCGCGGCAG
ATTCCGTTCAATTCCAGCTATATCTATTACGAGCTATCCCGCACGGGGCCGTTCTGGGAACAGATTGCGCAACAAGGCGG
GCTGGCGATGCACATCGCGGGCCACTTCCCTGAACTCAAGCTCGAACTTTGGGGAGTGCGTCACAAATGA