Detailed information of component protein


Summary

Component ID T6CP000635
Component protein type TssF
T6SS ID (Type) T6SS00072 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (627 a.a.); Nucleotide sequence (1881 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19175
Coordinate (Strand) 139563..141443 (-)
NCBI ID WP_004523687.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.6e-223 1..623
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-626 MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSARTQLKLEAEFPRFTQRLLEVAYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSIPPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVGEIRFSQITGLDRLSLYIGGDERIASHLFELIHASSVASVVRAPGAARGEGAVVAKNAVDFEGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLDRLPDELVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSVSRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTEVYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPPSAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDSLVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINVFTETELRSMQRGLVTRWKPRMGGRGAV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9925 - -


  Protein sequence: 627 a.a.    

>T6CP000635 NC_006351:c141443-139563 [Burkholderia pseudomallei K96243] [TssF]
MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSARTQLKLEAEFPRFTQRLLEVAY
PNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSIPPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQR
SLLPHTKLRGALRLRVRTVGEIRFSQITGLDRLSLYIGGDERIASHLFELIHASSVASVVRAPGAARGEGAVVAKNAVDF
EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLDRLPDELVTHVEAARFLLFCA
PIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSVSRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPR
TTSTNARKYGTRTPYVGTEVYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPPS
APREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDSLVGARTEPVVRRLPGHGLLVY
GRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINVFTETELRSMQRGLVTRWKPRMGGRGAV*

  Nucleotide sequence: 1881 bp    

>T6CP000635 NC_006351:c141443-139563 [Burkholderia pseudomallei K96243] [TssF]
ATGGACCCGCAGTTTCTCGATCACTACAACCGCGAATTGACCTACATGCGGGAGTTGTCCGCGGAATTCGCGGCGCAACA
CCCGAAGATCGCGCGCCGACTCGGCATGCAAGGCATCGAAGTGGCGGACCCGTACGTAGAACGGCTCATCGAGGCGTTCT
GCTTCATGTCCGCGCGCACGCAACTCAAGCTCGAGGCCGAGTTCCCCCGCTTCACGCAACGCCTGCTCGAAGTCGCCTAT
CCGAATTACGTCGCGCCGACGCCGTCGATGGCCGTCGCGCGCCTGCGTCCAAGCCTGCGGGAAGGCGACTTCAGCAAGGG
GTTCAAGGTTCCGCGTCACAGCATGCTGCGCTCGTCGATCCCGCCCGGCGAGCAGACCGCATGCGAATTCCGCACCGGCC
AGGACATCACGCTCTGGCCCATCGAGATCGCCGGCGCGACGCTGACCGCCGTGCCGCCCGATCTTCCGGATCTTCAGCGC
AGCCTGCTGCCGCACACGAAGCTGCGCGGCGCACTCCGGCTGCGCGTGCGCACCGTCGGCGAAATCAGGTTTTCGCAAAT
TACCGGGCTCGATCGCCTCTCGCTGTATATCGGCGGCGACGAACGCATCGCCTCCCATCTTTTCGAGCTGATTCACGCGA
GCAGCGTCGCGTCGGTCGTGCGCGCGCCGGGCGCCGCGCGCGGCGAAGGCGCCGTCGTCGCGAAGAATGCGGTCGACTTC
GAAGGCCTGTCGCCCGATCAAAGCCTGTTGCCGCTCGTCTGGAATACGTTCCACGGGCACAATCTGCTGCACGAATACTT
CACCTGCCGTCAGCGCTTCTATTTCTTCGCGCTCACGCAATTGAACGCCGGCTTGTCGCGCATCGACGGAAAGGAAGCCG
AAATCGTGCTGTTGCTCGACCGCTTGCCCGACGAGCTCGTCACGCACGTCGAGGCCGCGCGCTTTCTGCTGTTTTGCGCC
CCCATCGTCAATCTGTTCCCGAAGCGGACCGACCGGGTGGAAATCAATCGCGCCCAAACGGCTTTCCACCTGATACCGGA
CCGCACCCGCCCGCTCGATTACGAAGTGTTCTCGGTGTCGCGCGTGTTCGGGCAAAAAGCCGAGACGTCGACGGAAGTCA
CGTTCAATCCGCTCTATCAGACGCTGCATAGCGACATCGGCAATTACGGCCGGTATTTCTCGATCCTGCGCGAACCCAGA
ACGACATCGACCAACGCGCGTAAATATGGAACGCGCACGCCATACGTCGGAACGGAAGTCTACGTGTCGCTCGTCGACCA
GGCCGAAGCGCCGTACGCCGACGACATTCGTTACCTGTCCGTCGACGCATGGGTCACCAACCGCGATCTGCCCCGACTGA
TCCCGCGCAACGGCGTCAACGATCTGACGATGCAAGACTCCGTGCCGATCGAGGGCGTGAGCCTCGTCCATCCGCCGAGC
GCGCCGCGCGAGCCGTACGCGACCGGCGAAACCGCGTGGCGGCTGATTCGCCAGCTCAGCTTCAACTACATGCCGCTTGC
CGAGCTCGACCACCGCGACGGCGGGCAAGCACTGCGCAACATGCTGCGCCTCTTCGTCGGCACGAGCGAGCGCGAACAGG
CCACGCAGATCGACAGCCTGGTCGGCGCGCGCACGGAGCCTGTCGTCCGCCGTCTGCCCGGCCACGGATTACTGGTTTAC
GGGCGCGGCGTCCGGTGCGAGCTGACCGTCGACGAAAGCGGCTTCTCCGGGTTGAGTCCATACCTGTTCGGTCTCGTGCT
CGAGCAATACCTCACGCGCCACGTCTCGATCAATGTGTTCACCGAGACGGAGCTTCGCTCGATGCAACGCGGCCTCGTCA
CGCGCTGGAAACCGCGCATGGGCGGAAGGGGCGCGGTATGA