Detailed information of component protein
Summary
| Component ID | T6CP009347 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00072  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (230 a.a.); Nucleotide sequence (690 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BPS_RS19090 |
| Coordinate (Strand) | 114983..115672 (+) |
| NCBI ID | WP_045606155.1 |
| RefSeq | NC_006351 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 1.7e-31 | 9..203 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-229 | MSIEMPAQPLRMLLQDTMLHVALLTQGARISRVHDWRARCIALVRQFEQALQDGGYRSGIANELGLAQCVFLDEITMRNLSTEQKEEWLRELLQFRFHSIRDGLSKVRARIDRLCRGHSANAALLEMYSLFHEFGLLGDKQGHALADARVSEARPTPGKKAAETAEIWKDGGAANEAAHGRSWRIVGGLLAFAALMTMWLVIDTRLSHEVEQMEVTSGDEAAIHPASGD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9875 | - | - |
Protein sequence: 230 a.a.
>T6CP009347 NC_006351:114983-115672 [Burkholderia pseudomallei K96243] [TssL]
MSIEMPAQPLRMLLQDTMLHVALLTQGARISRVHDWRARCIALVRQFEQALQDGGYRSGIANELGLAQCVFLDEITMRNL
STEQKEEWLRELLQFRFHSIRDGLSKVRARIDRLCRGHSANAALLEMYSLFHEFGLLGDKQGHALADARVSEARPTPGKK
AAETAEIWKDGGAANEAAHGRSWRIVGGLLAFAALMTMWLVIDTRLSHEVEQMEVTSGDEAAIHPASGD*
MSIEMPAQPLRMLLQDTMLHVALLTQGARISRVHDWRARCIALVRQFEQALQDGGYRSGIANELGLAQCVFLDEITMRNL
STEQKEEWLRELLQFRFHSIRDGLSKVRARIDRLCRGHSANAALLEMYSLFHEFGLLGDKQGHALADARVSEARPTPGKK
AAETAEIWKDGGAANEAAHGRSWRIVGGLLAFAALMTMWLVIDTRLSHEVEQMEVTSGDEAAIHPASGD*
Nucleotide sequence: 690 bp
>T6CP009347 NC_006351:114983-115672 [Burkholderia pseudomallei K96243] [TssL]
ATGTCGATTGAAATGCCCGCGCAGCCGCTGCGCATGTTATTGCAGGACACGATGCTCCATGTCGCGCTATTGACGCAAGG
CGCGCGCATATCGCGCGTGCATGACTGGCGCGCGCGCTGCATCGCGCTCGTCAGGCAATTCGAGCAGGCGCTGCAGGACG
GCGGCTACCGCAGCGGTATTGCCAATGAATTGGGCCTCGCGCAATGCGTTTTTCTGGACGAGATCACGATGCGCAATCTG
TCGACCGAGCAAAAGGAAGAATGGTTGCGTGAGCTCCTTCAGTTCCGTTTCCACTCGATTCGGGATGGGTTGAGCAAAGT
GCGTGCGCGTATCGATCGCCTTTGCCGCGGGCATTCGGCGAATGCCGCATTGCTGGAAATGTATTCGTTGTTCCATGAAT
TCGGTCTCCTGGGAGACAAGCAAGGGCACGCGTTAGCCGACGCGCGGGTGTCGGAGGCAAGGCCGACGCCCGGAAAGAAA
GCCGCGGAAACGGCGGAGATTTGGAAGGACGGGGGGGCCGCCAATGAAGCGGCGCACGGACGCTCTTGGCGAATCGTCGG
CGGCCTGCTGGCGTTTGCGGCGCTCATGACGATGTGGCTCGTTATCGACACACGTCTGAGCCATGAAGTGGAACAGATGG
AAGTCACGTCCGGAGATGAAGCAGCGATTCATCCGGCATCGGGGGATTGA
ATGTCGATTGAAATGCCCGCGCAGCCGCTGCGCATGTTATTGCAGGACACGATGCTCCATGTCGCGCTATTGACGCAAGG
CGCGCGCATATCGCGCGTGCATGACTGGCGCGCGCGCTGCATCGCGCTCGTCAGGCAATTCGAGCAGGCGCTGCAGGACG
GCGGCTACCGCAGCGGTATTGCCAATGAATTGGGCCTCGCGCAATGCGTTTTTCTGGACGAGATCACGATGCGCAATCTG
TCGACCGAGCAAAAGGAAGAATGGTTGCGTGAGCTCCTTCAGTTCCGTTTCCACTCGATTCGGGATGGGTTGAGCAAAGT
GCGTGCGCGTATCGATCGCCTTTGCCGCGGGCATTCGGCGAATGCCGCATTGCTGGAAATGTATTCGTTGTTCCATGAAT
TCGGTCTCCTGGGAGACAAGCAAGGGCACGCGTTAGCCGACGCGCGGGTGTCGGAGGCAAGGCCGACGCCCGGAAAGAAA
GCCGCGGAAACGGCGGAGATTTGGAAGGACGGGGGGGCCGCCAATGAAGCGGCGCACGGACGCTCTTGGCGAATCGTCGG
CGGCCTGCTGGCGTTTGCGGCGCTCATGACGATGTGGCTCGTTATCGACACACGTCTGAGCCATGAAGTGGAACAGATGG
AAGTCACGTCCGGAGATGAAGCAGCGATTCATCCGGCATCGGGGGATTGA