Detailed information of component protein


Summary

Component ID T6CP000637
Component protein type TssH
T6SS ID (Type) T6SS00072 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (882 a.a.); Nucleotide sequence (2646 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19195
Coordinate (Strand) 144273..146918 (+)
NCBI ID WP_009939095.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 5e-36 608..773
AAA_lid_9 PF17871.3 3.4e-28 372..462
ClpB_D2-small PF10431.11 3e-14 780..855
AAA PF00004.31 1e-10 232..363
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-881 MTVSRQALFGKLGYSLFRSIESATAFCKLRGNPYVELVHWLHQMLQAADGDMQRIARHCDIDLGELERDMVRALGELPAGASSISDFSHHIETAIERAWVLATLDFGDRRIRGAWLLAALLKTPELRRVLLSISSAFGRIRVDELDAMLPAWIDGSPEANETPYDDSDFGAAIPGEASSAMQQKGGGSPLEQFCLDLTARARAGQIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVGKTAVVEGLARAIAAGDVPPKLADARLLSLDVGALLAGASMKGEFEARLKGVLEAAAKATLPVILFVDEIHTLIGAGGQAGTGDAANLLKPALARGTLRTIGATTWAEYKRHIEKDPALTRRFQVLQVPEPDEAAAIDMVRGLTRTFSRHHGVVVLDEAIRAAVKLSHRYIPSRQLPDKAISLLDTACARVALSQHAPPRELQDVRRRLEAARVRLELLDGEQRIGLGDEAALAQSRAEIAALEVEEQSIDACWRQQIEAAQTLLSAREAAGDAAASAIDALRELEHALSNLQGDHAFVFPEVNEAIVAEIMSDWTGIPVGRMVTDEVSAVRALPDTLAARVIGQRDALHQIGDRVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQNLITINMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEMFFQVFDKGYMEDGDGRYIDFRNTTILLTSNAGSDLVSGLCMDEACAPDADGLCAALASELLKTFPAAFLGRVTLVPYRPLAQETLSRIVRLHLDRVVTRMAENQGVALRYSDNVVDYVVNRCLVQETGARLLIGFIEQHVLPLLAKLWLDSLASKHVLTRVDLDVADPAAAPTEAFALRAS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9306 - -


  Protein sequence: 882 a.a.    

>T6CP000637 NC_006351:144273-146918 [Burkholderia pseudomallei K96243] [TssH]
MTVSRQALFGKLGYSLFRSIESATAFCKLRGNPYVELVHWLHQMLQAADGDMQRIARHCDIDLGELERDMVRALGELPAG
ASSISDFSHHIETAIERAWVLATLDFGDRRIRGAWLLAALLKTPELRRVLLSISSAFGRIRVDELDAMLPAWIDGSPEAN
ETPYDDSDFGAAIPGEASSAMQQKGGGSPLEQFCLDLTARARAGQIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVG
KTAVVEGLARAIAAGDVPPKLADARLLSLDVGALLAGASMKGEFEARLKGVLEAAAKATLPVILFVDEIHTLIGAGGQAG
TGDAANLLKPALARGTLRTIGATTWAEYKRHIEKDPALTRRFQVLQVPEPDEAAAIDMVRGLTRTFSRHHGVVVLDEAIR
AAVKLSHRYIPSRQLPDKAISLLDTACARVALSQHAPPRELQDVRRRLEAARVRLELLDGEQRIGLGDEAALAQSRAEIA
ALEVEEQSIDACWRQQIEAAQTLLSAREAAGDAAASAIDALRELEHALSNLQGDHAFVFPEVNEAIVAEIMSDWTGIPVG
RMVTDEVSAVRALPDTLAARVIGQRDALHQIGDRVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQNL
ITINMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEMFFQVFDKGYMEDGDGRYIDF
RNTTILLTSNAGSDLVSGLCMDEACAPDADGLCAALASELLKTFPAAFLGRVTLVPYRPLAQETLSRIVRLHLDRVVTRM
AENQGVALRYSDNVVDYVVNRCLVQETGARLLIGFIEQHVLPLLAKLWLDSLASKHVLTRVDLDVADPAAAPTEAFALRA
S*

  Nucleotide sequence: 2646 bp    

>T6CP000637 NC_006351:144273-146918 [Burkholderia pseudomallei K96243] [TssH]
ATGACAGTTTCAAGACAGGCACTATTCGGCAAGCTCGGCTACTCGCTGTTTCGCAGCATCGAATCGGCGACGGCGTTCTG
CAAGCTTCGCGGCAACCCTTACGTCGAGCTGGTGCATTGGCTGCATCAGATGCTTCAGGCCGCTGACGGCGATATGCAGC
GGATCGCTCGCCACTGCGACATCGACCTCGGCGAGCTGGAGCGCGACATGGTGCGCGCGCTCGGCGAACTGCCGGCGGGC
GCGAGCTCGATCAGCGATTTCTCGCACCACATCGAGACGGCGATCGAGCGCGCGTGGGTGCTGGCGACACTGGATTTCGG
CGATCGCCGGATTCGCGGCGCGTGGCTACTGGCTGCGTTGCTGAAGACGCCGGAGCTCAGGCGCGTACTGCTGTCGATTT
CGTCCGCGTTCGGCCGGATTCGTGTCGACGAACTGGATGCGATGTTGCCGGCCTGGATCGACGGCTCGCCCGAGGCGAAC
GAGACGCCGTACGACGACAGCGACTTCGGCGCGGCCATACCGGGCGAGGCGTCGAGCGCGATGCAGCAAAAGGGCGGCGG
TTCACCGCTGGAGCAGTTCTGCCTCGATCTCACCGCGCGAGCGCGAGCGGGGCAGATCGATCCGGTCGTCGGTCGTGAGC
TGGAAATCCGCACGATGATCGACGTCCTGTTGCGCCGCCGCCAGAACAACCCGCTGCTGACGGGCGAGGCGGGCGTGGGC
AAGACGGCCGTCGTCGAAGGGCTCGCGCGCGCGATCGCCGCCGGCGATGTGCCGCCGAAGCTTGCCGATGCGCGCCTGCT
GAGCCTCGATGTCGGCGCGCTGTTGGCCGGGGCGAGCATGAAGGGCGAATTCGAGGCGCGCCTGAAAGGCGTGCTGGAGG
CGGCGGCGAAAGCGACGCTGCCCGTCATTCTGTTTGTCGACGAGATTCACACGCTGATCGGCGCGGGCGGCCAGGCGGGC
ACCGGAGATGCCGCGAACCTGCTCAAGCCCGCGCTCGCGCGCGGCACGCTGCGAACGATCGGTGCGACGACGTGGGCGGA
ATACAAGCGGCACATCGAAAAGGATCCGGCGCTCACACGCCGCTTCCAGGTGTTGCAGGTTCCCGAGCCCGACGAGGCGG
CCGCGATCGACATGGTTCGAGGGCTGACGCGAACCTTCTCGCGTCATCATGGCGTCGTCGTGCTGGACGAGGCGATTCGC
GCGGCGGTCAAGCTGTCGCATCGCTACATTCCATCCCGTCAGTTGCCGGACAAGGCGATCAGCCTGCTCGATACGGCGTG
CGCGCGCGTCGCGTTGTCGCAGCATGCGCCGCCGCGTGAGCTGCAGGACGTCCGCAGAAGATTGGAGGCCGCGAGGGTGC
GGCTCGAATTGCTCGACGGCGAGCAGCGCATCGGCCTTGGCGACGAAGCCGCGCTCGCGCAGTCTCGCGCGGAAATCGCC
GCGCTCGAGGTGGAGGAGCAATCGATCGATGCTTGCTGGCGGCAGCAGATCGAGGCCGCGCAGACGCTGCTCAGCGCGCG
CGAGGCGGCGGGCGACGCTGCGGCGAGCGCGATCGACGCGCTGCGCGAGCTGGAGCATGCGCTGTCGAACCTGCAAGGCG
ATCACGCGTTCGTTTTCCCCGAGGTCAACGAAGCGATCGTCGCGGAGATCATGTCCGACTGGACCGGCATTCCGGTCGGC
AGAATGGTGACGGACGAAGTGTCCGCCGTGCGCGCCTTGCCGGACACGCTCGCCGCCCGCGTGATCGGTCAACGCGATGC
GTTGCATCAGATTGGCGATCGGGTGCAAACGGCGCGCGCCGGATTGACCGATCCGAAGAAGCCGCTCGGCGTGTTCCTGC
TCGCGGGGCCGTCGGGCGTCGGCAAGACGGAGACGGCATTGGCGCTTGCCGAGGCGCTGTACGGCGGCGAGCAGAATCTC
ATCACGATCAACATGAGCGAATATCAGGAGGCGCATACGGTATCGGGGCTGAAGGGCGCCCCGCCGGGTTACGTCGGATA
CGGCGAGGGCGGCGTGCTGACCGAGGCGGTGCGCAGGCGTCCGTATTCCGTCGTGCTCCTCGACGAGATCGAGAAGGCGC
ATCCCGACGTCCACGAGATGTTCTTCCAGGTATTCGACAAGGGCTACATGGAGGACGGCGACGGGCGCTATATCGATTTT
CGCAACACGACGATTCTTCTCACCAGCAATGCAGGCTCCGACCTCGTGTCCGGACTGTGCATGGACGAGGCTTGCGCTCC
CGACGCGGACGGCCTTTGCGCCGCGCTCGCTTCCGAATTGCTCAAGACGTTTCCCGCGGCGTTTCTCGGGCGCGTGACGC
TGGTGCCCTATCGTCCGCTCGCGCAGGAAACGCTATCGCGCATCGTCCGGCTGCATCTGGACCGAGTGGTGACGCGAATG
GCCGAGAATCAGGGTGTCGCCCTGCGTTATTCGGACAATGTCGTCGATTACGTCGTCAATCGCTGCCTCGTGCAGGAAAC
GGGGGCGCGCTTGCTGATCGGCTTCATCGAGCAGCATGTGTTGCCGCTGCTCGCGAAGCTCTGGCTGGATTCGCTTGCGT
CCAAGCACGTGCTGACACGCGTCGACCTCGACGTGGCCGATCCCGCCGCGGCCCCGACCGAAGCGTTCGCGCTGCGCGCT
TCATGA