Detailed information of component protein


Summary

Component ID T6CP011467
Component protein type TagL
T6SS ID (Type) T6SS00072 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (559 a.a.); Nucleotide sequence (1677 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19095
Coordinate (Strand) 115675..117351 (+)
NCBI ID WP_011205338.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 2.3e-20 441..537
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MSRQIR
Transmembrane helix 7-29 FWLVWGAIPFVVLASLCLPLRMQ
Outside 30-32 PDW
Transmembrane helix 33-52 SHVLTIVLIIAAIVLAIEIF
Inside 53-331 EHSRETAQDRAAEAEIDDHELAVIIVAGPHASSLFNSSGDDTAFRREAGALWLRADSVEQLRDTMMRVKASRGRFPDAAVVPLVSESDDESDMRQAFAKWRTELREALCYPDAAYVLPCYLAVYTCLGFKGADGARPKWTGDAIEIGTRQMNAASKVGELLASIRQQLLRPSPTGSSAQCALGLGVFDWLDATALLSSMTMLANTPPFMLKGLTLANVGRRPIRPGAWTRWLTVRTGLHIRQTKSSMAPLPVPRVAKHAESGIREGWSSARHLVSTRAS
Transmembrane helix 332-354 FVPALVFSTVSTLGIAVAVSGWM
Outside 355-558 NSRMIQRVSNDIADYRSGADEWIGRKRFAQARLEHDRTAIVQTLLDGVPTGFGWGLYRGQELLVKLDTVLDSPRTASIAMQLDTVSLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHADSSGSDAANFQLSEARARAIRDWFVDQGVLKTRFIVQGAGDTHPIADNDSPSGRAQNRRVEVLLIPDVASDRKASGTGL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8870 - -


  Protein sequence: 559 a.a.    

>T6CP011467 NC_006351:115675-117351 [Burkholderia pseudomallei K96243] [TagL]
MSRQIRFWLVWGAIPFVVLASLCLPLRMQPDWSHVLTIVLIIAAIVLAIEIFEHSRETAQDRAAEAEIDDHELAVIIVAG
PHASSLFNSSGDDTAFRREAGALWLRADSVEQLRDTMMRVKASRGRFPDAAVVPLVSESDDESDMRQAFAKWRTELREAL
CYPDAAYVLPCYLAVYTCLGFKGADGARPKWTGDAIEIGTRQMNAASKVGELLASIRQQLLRPSPTGSSAQCALGLGVFD
WLDATALLSSMTMLANTPPFMLKGLTLANVGRRPIRPGAWTRWLTVRTGLHIRQTKSSMAPLPVPRVAKHAESGIREGWS
SARHLVSTRASFVPALVFSTVSTLGIAVAVSGWMNSRMIQRVSNDIADYRSGADEWIGRKRFAQARLEHDRTAIVQTLLD
GVPTGFGWGLYRGQELLVKLDTVLDSPRTASIAMQLDTVSLFAAGKATFSPGAAQRELQHALRMILANPEQRVLIVGHAD
SSGSDAANFQLSEARARAIRDWFVDQGVLKTRFIVQGAGDTHPIADNDSPSGRAQNRRVEVLLIPDVASDRKASGTGL*

  Nucleotide sequence: 1677 bp    

>T6CP011467 NC_006351:115675-117351 [Burkholderia pseudomallei K96243] [TagL]
ATGTCGCGTCAGATTCGATTTTGGCTCGTATGGGGCGCCATACCCTTCGTGGTGCTCGCGAGCCTTTGCCTGCCGTTGCG
CATGCAGCCGGATTGGTCTCATGTGCTGACCATCGTTCTGATCATTGCCGCCATCGTGCTGGCGATCGAAATATTCGAAC
ACTCTCGCGAGACAGCGCAAGACCGAGCGGCCGAAGCCGAAATCGACGATCACGAGCTGGCGGTGATCATCGTCGCGGGC
CCTCACGCATCGTCGCTTTTCAATAGCAGCGGGGACGATACGGCGTTTCGGCGCGAAGCCGGCGCGTTATGGCTGCGCGC
CGACAGCGTCGAGCAATTGCGAGACACGATGATGCGCGTCAAGGCGTCGCGCGGACGGTTCCCGGACGCCGCCGTGGTGC
CGCTCGTATCGGAAAGCGATGACGAAAGCGACATGAGGCAGGCGTTCGCGAAGTGGCGAACCGAACTCCGCGAAGCGCTT
TGCTATCCCGATGCGGCCTATGTCCTGCCTTGCTATCTCGCCGTCTACACGTGTCTTGGATTCAAGGGAGCCGACGGCGC
GCGTCCGAAGTGGACGGGCGATGCAATAGAAATCGGCACGAGGCAGATGAATGCCGCATCGAAAGTGGGCGAGCTGCTCG
CATCGATTCGACAACAACTGCTTCGGCCGTCGCCCACCGGTTCGTCGGCGCAGTGCGCGCTGGGGCTCGGCGTGTTCGAT
TGGCTCGACGCCACGGCGCTGCTGTCGTCGATGACCATGCTGGCGAATACCCCGCCATTCATGCTGAAAGGGCTGACGCT
CGCGAATGTCGGCAGACGGCCGATACGTCCGGGAGCGTGGACGCGCTGGCTCACTGTTCGGACCGGTCTCCATATTCGCC
AGACCAAATCGTCGATGGCGCCGCTTCCCGTGCCGCGCGTGGCGAAGCATGCCGAAAGCGGCATTCGGGAAGGATGGAGC
AGCGCGCGCCATCTCGTTTCCACTCGTGCGAGCTTCGTGCCGGCGCTCGTGTTCTCCACTGTTTCGACGCTGGGCATCGC
CGTGGCGGTCTCGGGCTGGATGAACAGCCGCATGATCCAGCGGGTGTCGAACGATATCGCGGATTATCGGAGCGGAGCCG
ACGAGTGGATCGGGAGGAAGCGCTTTGCGCAGGCCCGCCTCGAACACGATCGCACGGCGATCGTGCAGACGCTGCTCGAT
GGCGTACCGACCGGTTTCGGCTGGGGACTCTACCGGGGGCAGGAGTTGCTGGTCAAGCTCGATACGGTGCTGGATTCGCC
GCGCACGGCGTCGATCGCGATGCAGCTCGACACGGTATCGCTGTTCGCCGCGGGCAAGGCTACATTTTCTCCGGGCGCCG
CGCAGCGTGAGTTGCAACATGCATTGCGGATGATTCTCGCCAATCCGGAACAACGTGTGCTGATCGTCGGTCATGCAGAC
AGCTCCGGCTCGGATGCGGCCAATTTTCAGTTATCCGAAGCGCGTGCGCGCGCGATTCGTGACTGGTTCGTCGATCAAGG
CGTGCTGAAGACGCGCTTCATCGTGCAAGGAGCCGGCGATACGCATCCGATCGCCGATAACGACAGCCCTTCGGGACGTG
CGCAGAATCGCCGTGTCGAGGTCTTGCTGATTCCGGACGTTGCTTCCGACAGGAAGGCGAGCGGTACGGGACTATAG