SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000634
Component protein type	TssG
T6SS ID (Type)	T6SS00072 (Type i3)
Strain	Burkholderia pseudomallei K96243
Replicon	chromosome II
Sequence	Protein sequence (350 a.a.); Nucleotide sequence (1050 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	BPS_RS19170
Coordinate (Strand)	138517..139566 (-)
NCBI ID	WP_011205343.1
RefSeq	NC_006351
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	1e-95	30..329

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-349	MTAHPPAARPIDAHSPLHPDALRAWFDPQAPWRAGFLSLLRAIAARDTRVPLPGTACLPKEEAFRIGQRPSMAFAPREIASLDVQRGRLDIQLFGLGLWGPQGPLPLHMTELAYNRAESYQDHAIAHFSNLFHHRALALFYRAWASSQATVSLDRAEHETFSFYIGSLMGTDPEEAARTHPPTHARYAACAHLVREARNPDGVAATLSHYFGVPIAVDEYVFHWIRIAPPERCLLGARAASTVMGEGALLGDMVADCQHKFRLVIGPLDLDQYLRLTPHGNDLPTLVDWVRAFVGHEYDWEIKLLVKPRAAPPARADTTHRLGYSTWLGESRDDRPVVGMVFEPEKYCS

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9660	-	-

Protein sequence: 350 a.a.

						>T6CP000634 NC_006351:c139566-138517 [Burkholderia pseudomallei K96243] [TssG]
MTAHPPAARPIDAHSPLHPDALRAWFDPQAPWRAGFLSLLRAIAARDTRVPLPGTACLPKEEAFRIGQRPSMAFAPREIA
SLDVQRGRLDIQLFGLGLWGPQGPLPLHMTELAYNRAESYQDHAIAHFSNLFHHRALALFYRAWASSQATVSLDRAEHET
FSFYIGSLMGTDPEEAARTHPPTHARYAACAHLVREARNPDGVAATLSHYFGVPIAVDEYVFHWIRIAPPERCLLGARAA
STVMGEGALLGDMVADCQHKFRLVIGPLDLDQYLRLTPHGNDLPTLVDWVRAFVGHEYDWEIKLLVKPRAAPPARADTTH
RLGYSTWLGESRDDRPVVGMVFEPEKYCS*					

Nucleotide sequence: 1050 bp

						>T6CP000634 NC_006351:c139566-138517 [Burkholderia pseudomallei K96243] [TssG]
ATGACGGCGCATCCGCCCGCCGCCCGGCCCATCGACGCCCACTCGCCCCTGCATCCGGACGCACTGCGGGCATGGTTCGA
TCCGCAAGCGCCGTGGCGCGCCGGCTTTCTGAGCCTGTTGCGCGCAATCGCCGCACGCGACACGCGCGTGCCCTTGCCCG
GAACGGCGTGTCTGCCGAAGGAAGAGGCGTTTCGCATCGGACAACGGCCGTCGATGGCCTTCGCGCCGCGCGAGATCGCA
TCGCTCGACGTGCAGCGCGGGCGTCTCGACATTCAGCTGTTCGGCCTCGGCCTATGGGGGCCGCAGGGGCCGTTGCCGCT
TCACATGACCGAGCTCGCGTACAACCGCGCCGAGAGCTATCAGGATCATGCGATCGCGCATTTCTCCAATCTCTTTCACC
ATCGTGCGCTCGCGTTGTTCTATCGTGCGTGGGCGTCGTCACAGGCGACCGTATCGCTCGATCGCGCCGAGCACGAAACG
TTCTCGTTCTATATCGGCAGCCTGATGGGCACCGATCCCGAAGAAGCCGCGCGTACGCACCCGCCCACGCACGCGCGGTA
CGCCGCATGCGCGCATCTCGTGCGCGAGGCGCGCAATCCGGACGGCGTGGCCGCCACGCTGTCGCATTACTTCGGCGTGC
CGATCGCCGTCGACGAATACGTCTTCCACTGGATCCGGATTGCGCCGCCGGAGCGTTGCCTGCTCGGCGCGCGCGCCGCA
TCGACCGTCATGGGCGAGGGCGCGCTGCTCGGCGACATGGTTGCCGATTGCCAGCACAAGTTCCGGCTCGTCATCGGCCC
GCTCGATCTCGACCAATATCTTCGCCTGACGCCGCACGGCAACGATCTGCCGACCCTGGTCGATTGGGTGCGCGCCTTCG
TCGGTCACGAATACGACTGGGAGATCAAGCTGCTCGTCAAGCCACGCGCCGCGCCGCCCGCCCGCGCGGATACCACGCAC
CGCCTCGGCTATTCGACCTGGCTCGGCGAATCGAGGGACGACAGGCCGGTCGTCGGCATGGTGTTCGAGCCGGAAAAATA
CTGTTCCTGA					