Detailed information of component protein


Summary

Component ID T6CP000626
Component protein type TssC
T6SS ID (Type) T6SS00072 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (500 a.a.); Nucleotide sequence (1500 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19105
Coordinate (Strand) 118302..119801 (+)
NCBI ID WP_004523699.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 8.3e-136 68..371
VipB_2 PF18945.2 8.4e-46 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-499 MAARESQARSADAQLATHSDFNALLSREFKPKTEQAREAVEHAVKTLAEQALANSVTLSDDAYKSIEAIIGEIDRKLSEQINLILHHDDFQQLESAWRGLHHLVTNTETDEKLKIRFMDVSKDDLRRTMKRYKGVAWDQSPFFKQIYEEEYGQLGGEPYGCLVADYYFDHTPPDVDLLSSIGKVAAAAHAPFITGASPSVLQMDSWQELANPRDLTKIFTQNLEYAPWNSLRNSEDARYIGLAMPRFLARLPYGIRTNPVDEFDFEESTDGSDHRKYVWANAAYAMAVNINRSFKHYGWCTLIRGVESGGVVENLPCHTFPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLIHRKNTDYAAFIGAQSLQKPAEYYDPDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKEREDMQQWLNEWIMNYVDADPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQLEGLTVSLRLVAKLPSVKEAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9910 - -


  Protein sequence: 500 a.a.    

>T6CP000626 NC_006351:118302-119801 [Burkholderia pseudomallei K96243] [TssC]
MAARESQARSADAQLATHSDFNALLSREFKPKTEQAREAVEHAVKTLAEQALANSVTLSDDAYKSIEAIIGEIDRKLSEQ
INLILHHDDFQQLESAWRGLHHLVTNTETDEKLKIRFMDVSKDDLRRTMKRYKGVAWDQSPFFKQIYEEEYGQLGGEPYG
CLVADYYFDHTPPDVDLLSSIGKVAAAAHAPFITGASPSVLQMDSWQELANPRDLTKIFTQNLEYAPWNSLRNSEDARYI
GLAMPRFLARLPYGIRTNPVDEFDFEESTDGSDHRKYVWANAAYAMAVNINRSFKHYGWCTLIRGVESGGVVENLPCHTF
PTDDGGIDMKCPTEIAISDRREAELAKNGFIPLIHRKNTDYAAFIGAQSLQKPAEYYDPDATANANLSARLPYLFACSRF
AHYLKCIVRDKIGSFKEREDMQQWLNEWIMNYVDADPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQLE
GLTVSLRLVAKLPSVKEAA*

  Nucleotide sequence: 1500 bp    

>T6CP000626 NC_006351:118302-119801 [Burkholderia pseudomallei K96243] [TssC]
ATGGCTGCACGTGAATCTCAGGCGCGCTCCGCCGATGCACAGCTCGCTACGCACTCGGACTTCAATGCCCTGCTGTCGCG
CGAGTTCAAACCGAAGACCGAACAGGCGCGCGAGGCGGTGGAACATGCCGTCAAGACGCTGGCCGAGCAGGCGCTCGCCA
ATTCTGTGACGTTGTCGGACGACGCGTACAAGAGCATCGAAGCGATCATCGGCGAAATCGATCGAAAGCTGTCCGAGCAG
ATCAACCTGATTCTGCATCACGACGATTTCCAGCAGCTGGAAAGCGCATGGCGCGGCCTGCATCATCTGGTGACGAATAC
CGAGACGGACGAGAAGCTCAAGATCCGCTTCATGGACGTCTCCAAAGACGATCTGCGCCGTACGATGAAGCGATACAAAG
GCGTGGCCTGGGACCAGAGCCCGTTTTTCAAGCAGATCTACGAAGAGGAATACGGTCAGCTCGGCGGCGAGCCGTATGGA
TGCCTCGTGGCCGACTACTACTTCGACCACACGCCGCCGGACGTCGATCTGCTTTCGTCGATCGGCAAGGTGGCGGCTGC
CGCGCACGCTCCGTTCATTACCGGCGCATCGCCTTCGGTACTCCAGATGGATTCCTGGCAAGAGCTGGCCAATCCGCGCG
ACCTGACGAAGATCTTCACGCAGAACCTCGAATATGCGCCCTGGAATTCGCTGCGCAATTCCGAAGATGCCCGTTATATC
GGTCTTGCGATGCCGCGCTTCCTCGCACGCTTGCCGTATGGAATCAGGACGAATCCCGTCGACGAATTCGATTTCGAGGA
ATCGACGGATGGGTCCGATCATCGCAAGTACGTGTGGGCGAATGCCGCGTATGCGATGGCGGTCAACATCAATCGCTCGT
TCAAGCATTACGGCTGGTGCACGCTGATTCGCGGTGTGGAAAGCGGCGGCGTCGTCGAGAACCTGCCTTGCCATACGTTC
CCGACGGACGACGGCGGCATCGACATGAAGTGTCCGACCGAAATCGCGATTTCCGATCGCCGCGAAGCGGAGCTCGCGAA
GAACGGCTTCATTCCGCTGATCCATCGAAAGAACACCGACTACGCGGCATTCATCGGAGCGCAATCGCTGCAGAAGCCGG
CCGAGTACTACGACCCGGACGCCACCGCGAACGCGAACCTGTCCGCCCGCCTGCCGTACCTGTTCGCGTGCTCGCGCTTC
GCGCATTACCTGAAGTGCATCGTGCGCGACAAGATCGGTTCGTTCAAGGAGCGCGAAGACATGCAGCAGTGGCTCAACGA
ATGGATCATGAACTATGTCGACGCCGACCCGGCGAACTCGTCGCAGGAGACCAAGGCGCGCCGTCCGCTGGCCGCGGCCG
AAGTGGTTGTCGAAGACGTGGAAGGCAATCCGGGCTACTACCAGGCGAAGTTCTTCCTGCGTCCGCACTTCCAGCTGGAA
GGGTTGACCGTGTCGCTGCGCCTCGTCGCGAAGCTGCCCTCGGTCAAGGAAGCGGCGTAA