Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00052  |
| T6SS type | Type i2 |
| Strain | Photorhabdus laumondii subsp. laumondii TTO1 |
| Replicon (RefSeq) | chromosome (NC_005126) |
| Location | 3805730..3880777 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] [2] Bernard CS et al (2010) Nooks and crannies in type VI secretion regulation. J Bacteriol. 192(15):3850-60. [PudMed:20511495] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssB | TssC | TssD | TssE | TssF | TssG | TssI | TssJ | TssK | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 3 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PLU_RS16020 | 3805730..3806371 | - | 642 | WP_011147422.1 | hypothetical protein | ||
| PLU_RS16025 | 3807331..3808020 | + | 690 | WP_011147423.1 | PAS domain-containing protein | ||
| PLU_RS16030 | 3808060..3808746 | + | 687 | WP_011147424.1 | PAS and helix-turn-helix domain-containing protein | ||
| PLU_RS16035 | 3809059..3809727 | + | 669 | WP_011147425.1 | PAS domain-containing protein | ||
| T6CP000448 | TssE | PLU_RS16040 (tssE) | 3810052..3810480 | - | 429 | WP_011147426.1 | type VI secretion system baseplate subunit TssE |
| T6CP000449 | TssJ | PLU_RS16045 (tssJ) | 3810485..3811024 | - | 540 | WP_011147427.1 | type VI secretion system lipoprotein TssJ |
| T6CP000450 | TssG | PLU_RS16050 (tssG) | 3811002..3812090 | - | 1089 | WP_011147428.1 | type VI secretion system baseplate subunit TssG |
| T6CP000451 | TssF | PLU_RS16055 (tssF) | 3812054..3813814 | - | 1761 | WP_011147429.1 | type VI secretion system baseplate subunit TssF |
| PLU_RS16065 | 3814341..3815324 | - | 984 | WP_011147430.1 | hypothetical protein | ||
| PLU_RS16070 | 3815368..3817845 | - | 2478 | WP_011147431.1 | DUF2235 domain-containing protein | ||
| PLU_RS16075 | 3817833..3818345 | - | 513 | WP_011147432.1 | DUF3304 domain-containing protein | ||
| PLU_RS16080 | 3818397..3818909 | - | 513 | WP_011147433.1 | DUF3304 domain-containing protein | ||
| PLU_RS26810 | 3819484..3819624 | - | 141 | WP_157866904.1 | hypothetical protein | ||
| T6CP000452 | TssM | PLU_RS16085 | 3819697..3823068 | - | 3372 | WP_011147435.1 | type VI secretion protein VasK |
| PLU_RS16090 | 3823065..3824183 | - | 1119 | WP_041380211.1 | hypothetical protein | ||
| PLU_RS16105 | 3824737..3825786 | - | 1050 | WP_049789784.1 | hypothetical protein | ||
| PLU_RS16110 | 3825840..3827453 | - | 1614 | WP_041380217.1 | hypothetical protein | ||
| T6CP000453 | TssI | PLU_RS16115 (vgrG) | 3827457..3829982 | - | 2526 | WP_011147441.1 | type VI secretion system tip protein VgrG |
| T6CP000454 | TssM | PLU_RS16120 | 3830821..3834207 | - | 3387 | WP_165828660.1 | type VI secretion protein VasK |
| PLU_RS16125 | 3834188..3835339 | - | 1152 | WP_011147443.1 | hypothetical protein | ||
| T6CP011443 | PAAR | PLU_RS16130 | 3835336..3835593 | - | 258 | WP_011147444.1 | PAAR domain-containing protein |
| PLU_RS16135 | 3835590..3838079 | - | 2490 | WP_011147445.1 | DUF2235 domain-containing protein | ||
| PLU_RS16140 | 3838067..3838579 | - | 513 | WP_011147446.1 | DUF3304 domain-containing protein | ||
| PLU_RS16145 | 3838631..3839143 | - | 513 | WP_011147447.1 | DUF3304 domain-containing protein | ||
| PLU_RS16150 | 3839195..3839710 | - | 516 | WP_011147448.1 | DUF3304 domain-containing protein | ||
| PLU_RS16155 | 3839720..3840502 | - | 783 | WP_011147449.1 | DUF4123 domain-containing protein | ||
| T6CP000455 | TssI | PLU_RS16160 (vgrG) | 3840506..3842905 | - | 2400 | WP_011147450.1 | type VI secretion system tip protein VgrG |
| PLU_RS26815 | 3843428..3843568 | - | 141 | WP_157866905.1 | hypothetical protein | ||
| T6CP000456 | TssM | PLU_RS16165 | 3843641..3847012 | - | 3372 | WP_011147451.1 | type VI secretion protein VasK |
| PLU_RS16170 | 3847009..3848127 | - | 1119 | WP_011147452.1 | hypothetical protein | ||
| PLU_RS16185 | 3848669..3849718 | - | 1050 | WP_011147454.1 | hypothetical protein | ||
| PLU_RS16190 | 3849897..3850988 | - | 1092 | WP_011147455.1 | hypothetical protein | ||
| PLU_RS16195 | 3850981..3852591 | - | 1611 | WP_011147456.1 | hypothetical protein | ||
| T6CP000457 | TssI | PLU_RS16200 (vgrG) | 3852594..3855122 | - | 2529 | WP_011147457.1 | type VI secretion system tip protein VgrG |
| T6CP008434 | TssD | PLU_RS16205 | 3855299..3855790 | - | 492 | WP_011147458.1 | Hcp family type VI secretion system effector |
| T6CP011444 | TagL | PLU_RS16210 | 3855809..3857536 | - | 1728 | WP_011147459.1 | OmpA family protein |
| PLU_RS16215 | 3857533..3857802 | - | 270 | WP_071824125.1 | DotU family type IV/VI secretion system protein | ||
| PLU_RS27215 | 3857757..3857915 | + | 159 | WP_162096530.1 | hypothetical protein | ||
| PLU_RS16220 | 3857849..3858214 | + | 366 | WP_049789715.1 | hypothetical protein | ||
| PLU_RS16225 (tnpB) | 3858208..3858543 | + | 336 | WP_011144475.1 | IS66 family insertion sequence element accessory protein TnpB | ||
| PLU_RS16230 | 3858607..3860112 | + | 1506 | WP_011145417.1 | IS66-like element ISPlu20 family transposase | ||
| PLU_RS16235 | 3860162..3860554 | - | 393 | WP_041380999.1 | DotU/TssL family secretion system protein | ||
| T6CP000458 | TssK | PLU_RS16240 (tssK) | 3860551..3861900 | - | 1350 | WP_011147460.1 | type VI secretion system baseplate subunit TssK |
| T6CP000459 | TssC | PLU_RS16245 (tssC) | 3861916..3863442 | - | 1527 | WP_011147461.1 | type VI secretion system contractile sheath large subunit |
| T6CP000460 | TssB | PLU_RS16250 (tssB) | 3863474..3863971 | - | 498 | WP_011147462.1 | type VI secretion system contractile sheath small subunit |
| PLU_RS16260 | 3865127..3880777 | - | 15651 | WP_011147463.1 | non-ribosomal peptide synthetase | ||
| PLU_RS26820 | 3880897..3881043 | - | 147 | WP_011147464.1 | hypothetical protein | ||
| PLU_RS16265 | 3881952..3882926 | - | 975 | pseudogene | serralysin family metalloprotease | ||
| PLU_RS16270 | 3882983..3884008 | + | 1026 | WP_011144720.1 | IS630-like element ISPlu19 family transposase | ||
| PLU_RS16275 | 3884023..3884493 | - | 471 | pseudogene | serine 3-dehydrogenase |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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