Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00052  |
| T6SS type | Type i2 |
| Strain | Photorhabdus laumondii subsp. laumondii TTO1 |
| Replicon (RefSeq) | chromosome (NC_005126) |
| Location | 3805730..3880777 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] [2] Bernard CS et al (2010) Nooks and crannies in type VI secretion regulation. J Bacteriol. 192(15):3850-60. [PudMed:20511495] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssB | TssC | TssD | TssE | TssF | TssG | TssI | TssJ | TssK | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 3 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PLU_RS16020 | 3805730..3806371 | - | 642 | WP_011147422.1 | hypothetical protein | ||
| PLU_RS16025 | 3807331..3808020 | + | 690 | WP_011147423.1 | PAS domain-containing protein | ||
| PLU_RS16030 | 3808060..3808746 | + | 687 | WP_011147424.1 | PAS and helix-turn-helix domain-containing protein | ||
| PLU_RS16035 | 3809059..3809727 | + | 669 | WP_011147425.1 | PAS domain-containing protein | ||
| T6CP000448 | TssE | PLU_RS16040 (tssE) | 3810052..3810480 | - | 429 | WP_011147426.1 | type VI secretion system baseplate subunit TssE |
| T6CP000449 | TssJ | PLU_RS16045 (tssJ) | 3810485..3811024 | - | 540 | WP_011147427.1 | type VI secretion system lipoprotein TssJ |
| T6CP000450 | TssG | PLU_RS16050 (tssG) | 3811002..3812090 | - | 1089 | WP_011147428.1 | type VI secretion system baseplate subunit TssG |
| T6CP000451 | TssF | PLU_RS16055 (tssF) | 3812054..3813814 | - | 1761 | WP_011147429.1 | type VI secretion system baseplate subunit TssF |
| PLU_RS16065 | 3814341..3815324 | - | 984 | WP_011147430.1 | hypothetical protein | ||
| PLU_RS16070 | 3815368..3817845 | - | 2478 | WP_011147431.1 | DUF2235 domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||