Detailed information of component protein


Summary

Component ID T6CP011443
Component protein type PAAR
T6SS ID (Type) T6SS00052 insolico (Type i2)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (86 a.a.); Nucleotide sequence (258 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS16130
Coordinate (Strand) 3835336..3835593 (-)
NCBI ID WP_011147444.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 3.9e-18 12..76
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-85 MKNVIRQGDSLREYGGTVLSGHYLCFGQPIACKGDPVQCHRHGMTTIAQGSAACLIDGQPVALHGHRCECGCTLVSSFPDYQVTS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6918 - -


  Protein sequence: 86 a.a.    

>T6CP011443 NC_005126:c3835593-3835336 [Photorhabdus laumondii subsp. laumondii TTO1] [PAAR]
MKNVIRQGDSLREYGGTVLSGHYLCFGQPIACKGDPVQCHRHGMTTIAQGSAACLIDGQPVALHGHRCECGCTLVSSFPD
YQVTS*

  Nucleotide sequence: 258 bp    

>T6CP011443 NC_005126:c3835593-3835336 [Photorhabdus laumondii subsp. laumondii TTO1] [PAAR]
ATGAAAAACGTAATCCGTCAGGGTGATAGCCTGCGCGAATATGGCGGTACGGTATTGTCGGGCCACTATCTTTGTTTCGG
ACAACCCATTGCTTGCAAGGGTGATCCTGTTCAGTGTCACCGTCATGGCATGACTACCATTGCTCAAGGGAGTGCGGCCT
GCCTGATAGACGGCCAGCCGGTGGCGTTGCATGGTCATCGTTGTGAATGTGGTTGTACGTTAGTCAGCTCTTTTCCCGAT
TATCAGGTGACGTCATGA