Detailed information of component protein


Summary

Component ID T6CP000455
Component protein type TssI
T6SS ID (Type) T6SS00052 insolico (Type i2)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (800 a.a.); Nucleotide sequence (2400 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS16160
Coordinate (Strand) 3840506..3842905 (-)
NCBI ID WP_011147450.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.3e-50 34..357
DUF2345 PF10106.11 7.4e-42 621..767
T6SS_Vgr PF13296.8 7.1e-34 498..594
Phage_base_V PF04717.14 6.6e-11 412..478
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-799 MTNLTPMIIFDHSRYRLKVWRNKAPLDVLAFTGQEALSQPFRYAIEFTSAEKGIEPAQMLMQQASFTLTSPAINPGIRWMPIVPPEPLRSVYGVISGFKLLSTSRDESRYEVTLEPRLALLARSHQYAIYQKLSVPEIVEKILRERHGFRGQDFLFSLAYSYPRREQVMQYGEDDLRFIQRLLAEVGIWYKVTADDRLKIDVVEFYDDQRDYQFNVYLPARNPSGMHGEEDAVVWGMETAYQVVEGKIATRNYDYHDARPYPGLNTEADVTRGDRTTYGEAYHYRDDYRIPGDRYAYQPEAESGVFYARLHHERYLNQRIRLRGMTTSATLVPGQELKVKGDAPETFRKGAIITHITNSARRDSSFEMTFTAIPYSETVCFRPERVPKPVMAGTIPARVSSTKVNDTYGDIDKDGLYRVAFNFDREKWPQGGESLWVRLARPYAGENYGFHWPLLEGTEVAIAFEGGDPDRPYIAHALHDSVHPDHVNLYNYKRNVLRTPANNKLRMDDERGREHIKLSTEYGGKSQLNLGHLVDSQRPHPDKRGEGFELRTDDWGAIRAGKGLFISADKQARAGGEVLEMAPAISLVKGAVNQVLEWGTVTKTHLNHQPDTESLKTYLQHVDQLKMAAMLLSAPEGVGIVSPQTVMVQSGQALYAQSAGDVHIASANRIGMNSIQAISLLAQNEGMRLVSGKGPLAIESHGDSLGLTSLNDVTVNSTQGHVQITAKNGLTLACGGAYIRLSPAGEIEIHGPGLLSLKGQHKMASPAKQDFPLPDLPESVCKTCLEKAQELSQGFVLRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9934 - -


  Protein sequence: 800 a.a.    

>T6CP000455 NC_005126:c3842905-3840506 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
MTNLTPMIIFDHSRYRLKVWRNKAPLDVLAFTGQEALSQPFRYAIEFTSAEKGIEPAQMLMQQASFTLTSPAINPGIRWM
PIVPPEPLRSVYGVISGFKLLSTSRDESRYEVTLEPRLALLARSHQYAIYQKLSVPEIVEKILRERHGFRGQDFLFSLAY
SYPRREQVMQYGEDDLRFIQRLLAEVGIWYKVTADDRLKIDVVEFYDDQRDYQFNVYLPARNPSGMHGEEDAVVWGMETA
YQVVEGKIATRNYDYHDARPYPGLNTEADVTRGDRTTYGEAYHYRDDYRIPGDRYAYQPEAESGVFYARLHHERYLNQRI
RLRGMTTSATLVPGQELKVKGDAPETFRKGAIITHITNSARRDSSFEMTFTAIPYSETVCFRPERVPKPVMAGTIPARVS
STKVNDTYGDIDKDGLYRVAFNFDREKWPQGGESLWVRLARPYAGENYGFHWPLLEGTEVAIAFEGGDPDRPYIAHALHD
SVHPDHVNLYNYKRNVLRTPANNKLRMDDERGREHIKLSTEYGGKSQLNLGHLVDSQRPHPDKRGEGFELRTDDWGAIRA
GKGLFISADKQARAGGEVLEMAPAISLVKGAVNQVLEWGTVTKTHLNHQPDTESLKTYLQHVDQLKMAAMLLSAPEGVGI
VSPQTVMVQSGQALYAQSAGDVHIASANRIGMNSIQAISLLAQNEGMRLVSGKGPLAIESHGDSLGLTSLNDVTVNSTQG
HVQITAKNGLTLACGGAYIRLSPAGEIEIHGPGLLSLKGQHKMASPAKQDFPLPDLPESVCKTCLEKAQELSQGFVLRS*

  Nucleotide sequence: 2400 bp    

>T6CP000455 NC_005126:c3842905-3840506 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
ATGACGAACCTAACACCGATGATCATCTTTGATCACAGCCGTTACAGACTAAAAGTGTGGCGTAATAAAGCACCGCTGGA
TGTGCTGGCCTTTACCGGACAGGAAGCCTTAAGCCAGCCGTTTCGCTATGCCATTGAATTCACCAGTGCGGAGAAAGGGA
TTGAACCGGCACAGATGCTGATGCAGCAAGCCTCATTTACCCTGACCTCGCCTGCGATCAATCCGGGGATACGGTGGATG
CCGATTGTGCCGCCGGAGCCGCTGCGTTCGGTTTACGGGGTGATCAGCGGCTTTAAACTGCTCTCCACTTCGCGGGACGA
AAGCCGTTACGAAGTGACGCTGGAGCCCCGGCTGGCGCTGCTGGCGAGAAGCCATCAATACGCTATTTACCAAAAACTGT
CCGTGCCGGAGATTGTGGAGAAAATCCTGCGGGAGCGACATGGTTTTCGCGGGCAGGACTTCCTGTTCAGTCTGGCGTAC
AGCTACCCGAGGCGGGAACAGGTGATGCAGTATGGCGAAGATGACCTGCGCTTTATCCAACGCCTGCTGGCGGAAGTGGG
TATCTGGTACAAAGTGACGGCGGATGACCGGTTAAAGATCGATGTGGTGGAGTTTTACGACGACCAGCGTGACTACCAGT
TCAATGTCTACCTGCCTGCCCGCAATCCGTCAGGTATGCACGGCGAGGAGGACGCGGTGGTGTGGGGCATGGAGACCGCG
TATCAGGTGGTGGAGGGAAAAATTGCGACTCGGAATTATGACTACCACGATGCCCGGCCGTATCCCGGCTTGAACACCGA
GGCGGATGTGACACGGGGCGATCGAACGACTTATGGCGAAGCGTACCATTACCGTGACGACTACCGAATACCCGGTGATC
GTTACGCCTATCAACCGGAGGCGGAAAGTGGGGTGTTTTATGCCCGTTTGCATCACGAACGTTACCTGAATCAACGCATT
CGCCTGCGGGGAATGACCACTTCCGCTACGCTGGTGCCGGGGCAGGAATTGAAAGTGAAAGGTGACGCCCCGGAAACGTT
TCGCAAAGGGGCGATCATCACCCACATCACCAACAGTGCCCGCCGGGACAGCAGTTTTGAGATGACATTCACTGCCATTC
CCTATTCCGAGACCGTGTGCTTTCGCCCGGAGCGGGTGCCGAAACCGGTGATGGCCGGCACGATACCCGCGCGGGTGAGC
AGTACCAAAGTGAATGATACCTACGGCGATATCGACAAAGACGGCTTATATCGGGTGGCGTTTAATTTTGACCGGGAGAA
ATGGCCGCAAGGCGGCGAAAGCTTGTGGGTGCGTCTGGCGCGCCCGTATGCGGGAGAGAACTATGGCTTTCACTGGCCGT
TGCTGGAAGGCACTGAAGTGGCGATCGCCTTTGAAGGGGGCGACCCGGACCGGCCCTATATTGCCCATGCTCTGCACGAC
TCAGTGCACCCGGATCACGTCAATCTCTACAACTACAAACGCAACGTTCTGCGCACCCCGGCGAATAACAAACTGCGGAT
GGATGACGAGCGCGGTCGGGAACATATCAAACTGAGTACCGAATACGGCGGTAAAAGCCAGTTGAACCTCGGTCATCTCG
TTGATAGCCAGCGCCCACACCCGGATAAACGGGGTGAAGGCTTTGAGCTGCGAACCGACGACTGGGGCGCGATCCGGGCC
GGTAAGGGGTTGTTTATCAGTGCGGATAAACAGGCCCGGGCGGGCGGTGAAGTGCTGGAGATGGCCCCGGCAATCAGTCT
GGTAAAAGGTGCGGTGAATCAGGTGCTGGAGTGGGGAACAGTGACCAAAACTCACCTGAATCATCAGCCGGATACTGAAA
GCCTGAAAACCTACTTACAGCATGTGGATCAACTGAAAATGGCGGCCATGCTGCTCAGTGCGCCGGAAGGGGTGGGGATT
GTCAGCCCGCAGACTGTGATGGTGCAAAGTGGTCAGGCGCTCTATGCCCAAAGTGCGGGGGATGTGCATATTGCCAGTGC
AAACCGGATTGGGATGAATTCGATACAGGCTATCTCCCTGTTAGCACAAAACGAAGGGATGCGTCTGGTGTCAGGGAAAG
GGCCGCTCGCCATTGAATCACATGGCGATAGTTTAGGTCTCACCTCATTAAACGATGTCACCGTCAATTCAACACAGGGT
CACGTCCAGATTACGGCGAAAAATGGCCTGACATTGGCGTGTGGAGGCGCGTACATCCGTCTTTCTCCGGCAGGAGAAAT
TGAAATTCACGGGCCGGGCCTGTTAAGCCTGAAAGGGCAGCACAAAATGGCGTCACCGGCGAAACAGGACTTTCCTTTGC
CTGACCTGCCTGAATCGGTGTGTAAAACGTGTTTGGAAAAAGCGCAGGAATTGTCGCAGGGGTTTGTTTTGAGGAGTTAA