Detailed information of component protein


Summary

Component ID T6CP000457
Component protein type TssI
T6SS ID (Type) T6SS00052 insolico (Type i2)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (843 a.a.); Nucleotide sequence (2529 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS16200
Coordinate (Strand) 3852594..3855122 (-)
NCBI ID WP_011147457.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.2e-50 34..357
DUF2345 PF10106.11 2.3e-49 621..767
T6SS_Vgr PF13296.8 4.6e-37 498..602
Phage_base_V PF04717.14 7.1e-11 412..478
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-842 MTNLTPMIIFDHSRYRLKVWRNKAPLDVLAFTGQEALSQPFRYAIEFTSAEKGIEPAQMLMQQASFTLTSPAINPGIRWMPVVPPEPLRSVYGVISGFKLLSTSRDESRYEVTLEPRLALLARSHQYAIYQKLSVPEIVEKILRERHGFRGQDFLFSLAYSYPRREQVMQYGEDDLRFIQRLLAEVGIWYKVTADDRLKIDVVEFYDDQRDYQFNVYLPARNPSGMHGEEDAVVWGMETAYQVVEGKITTRNYDYHDARPYPGLNTEEDVTRGDRTTYGEAYHYRDDYRIPGDRYAYQPETESGVFYARLHHERYLNQRIRLRGMTTSATLVPGQELKVKGDAPETFRKGAIITHITNSARRDSSFEMTFTAIPYSETVCFRPERVPKPVMAGTIPARVSSTKVNDTYGDIDKDGLYRVAFNFDREKWPQGGESLWVRLARPYAGENYGFHWPLLEGTEVAIAFEGGDPDRPYIAHALHDSVHPDHVNLYNYKRNVLRTPANNKLRMDDERGREHIKLSTEYGGKSQLNLGHLVDSQRPHPDKRGEGFELRTDDWGAIRAGKGLFISADKQARAGGEVLAMEAALNQLQQAQTLTEALCGAAEMAKAELADLQQQKALLSETLAELKKSALLLSAPEGIAQTTAKSLQLAAGENIIATSGKSTDFSVLKKFTVAAGERISLFAQKLGIKLFASKGRVEIEAQGDEMGLAALKDITVNSHEGKVIISAKQEILLVSGGGYIRIGNGQVECGAPNHIIQRAAVWQKFGGQSVSQMVSQRETVDFSVTPQVLWPFDDMPVKDQHAFLHNHDDSQHSSITGADGKTAKQKKLGVEAIKFYLKEGKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9934 - -


  Protein sequence: 843 a.a.    

>T6CP000457 NC_005126:c3855122-3852594 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
MTNLTPMIIFDHSRYRLKVWRNKAPLDVLAFTGQEALSQPFRYAIEFTSAEKGIEPAQMLMQQASFTLTSPAINPGIRWM
PVVPPEPLRSVYGVISGFKLLSTSRDESRYEVTLEPRLALLARSHQYAIYQKLSVPEIVEKILRERHGFRGQDFLFSLAY
SYPRREQVMQYGEDDLRFIQRLLAEVGIWYKVTADDRLKIDVVEFYDDQRDYQFNVYLPARNPSGMHGEEDAVVWGMETA
YQVVEGKITTRNYDYHDARPYPGLNTEEDVTRGDRTTYGEAYHYRDDYRIPGDRYAYQPETESGVFYARLHHERYLNQRI
RLRGMTTSATLVPGQELKVKGDAPETFRKGAIITHITNSARRDSSFEMTFTAIPYSETVCFRPERVPKPVMAGTIPARVS
STKVNDTYGDIDKDGLYRVAFNFDREKWPQGGESLWVRLARPYAGENYGFHWPLLEGTEVAIAFEGGDPDRPYIAHALHD
SVHPDHVNLYNYKRNVLRTPANNKLRMDDERGREHIKLSTEYGGKSQLNLGHLVDSQRPHPDKRGEGFELRTDDWGAIRA
GKGLFISADKQARAGGEVLAMEAALNQLQQAQTLTEALCGAAEMAKAELADLQQQKALLSETLAELKKSALLLSAPEGIA
QTTAKSLQLAAGENIIATSGKSTDFSVLKKFTVAAGERISLFAQKLGIKLFASKGRVEIEAQGDEMGLAALKDITVNSHE
GKVIISAKQEILLVSGGGYIRIGNGQVECGAPNHIIQRAAVWQKFGGQSVSQMVSQRETVDFSVTPQVLWPFDDMPVKDQ
HAFLHNHDDSQHSSITGADGKTAKQKKLGVEAIKFYLKEGKE*

  Nucleotide sequence: 2529 bp    

>T6CP000457 NC_005126:c3855122-3852594 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
ATGACGAACCTAACACCGATGATCATCTTTGATCACAGCCGTTACAGACTAAAAGTGTGGCGCAATAAAGCACCGCTGGA
TGTGCTGGCCTTTACCGGACAGGAAGCCTTAAGCCAGCCGTTTCGCTATGCCATTGAATTCACCAGTGCGGAGAAAGGGA
TTGAACCGGCACAGATGCTGATGCAGCAAGCCTCATTTACCCTGACCTCGCCTGCGATCAATCCGGGGATACGGTGGATG
CCGGTTGTGCCGCCGGAGCCGCTGCGCTCGGTTTACGGGGTGATCAGCGGCTTTAAACTGCTCTCCACTTCGCGGGACGA
AAGCCGTTACGAAGTGACGCTGGAGCCCCGGCTGGCGCTGCTGGCGAGAAGCCATCAATACGCTATTTACCAAAAACTGT
CCGTGCCGGAGATTGTGGAGAAAATCCTGCGGGAGCGACATGGTTTTCGCGGGCAGGACTTCCTGTTCAGTCTGGCGTAC
AGCTACCCGAGGCGGGAACAGGTGATGCAGTATGGCGAAGATGACCTGCGCTTTATCCAACGCCTGCTGGCGGAAGTGGG
TATCTGGTACAAAGTGACGGCGGATGACCGGTTAAAGATCGATGTGGTGGAGTTTTACGACGACCAGCGTGACTACCAGT
TCAATGTCTACCTGCCTGCCCGCAATCCGTCAGGTATGCACGGCGAGGAGGACGCGGTGGTGTGGGGCATGGAGACCGCG
TATCAGGTGGTGGAGGGGAAAATTACGACTCGGAATTATGACTACCACGATGCCCGGCCGTATCCCGGCTTGAACACCGA
GGAGGATGTGACACGGGGCGATCGAACGACTTATGGCGAAGCGTACCATTACCGTGACGACTACCGAATACCCGGTGATC
GTTACGCCTATCAACCGGAGACGGAAAGCGGGGTGTTTTATGCCCGTTTGCATCACGAACGTTACCTGAATCAACGTATT
CGCCTGCGGGGAATGACCACTTCCGCTACGCTGGTGCCGGGGCAGGAGTTGAAAGTGAAAGGTGACGCCCCGGAAACGTT
TCGCAAAGGGGCGATCATCACCCACATCACCAACAGTGCCCGCCGGGACAGCAGTTTTGAGATGACATTCACGGCCATTC
CCTATTCCGAGACCGTGTGCTTTCGCCCGGAGCGGGTGCCGAAACCGGTGATGGCCGGCACGATACCCGCGCGGGTGAGC
AGTACCAAAGTGAATGATACCTACGGCGATATCGACAAAGACGGCTTATATCGGGTGGCGTTTAACTTTGACCGGGAGAA
ATGGCCGCAAGGCGGCGAAAGCTTGTGGGTGCGTCTGGCGCGCCCGTATGCGGGAGAGAACTATGGCTTTCACTGGCCGT
TGCTGGAAGGCACTGAAGTGGCGATCGCCTTTGAAGGGGGCGACCCGGACCGGCCCTATATCGCCCACGCGTTGCACGAC
TCAGTGCACCCGGATCACGTCAATCTCTACAACTACAAACGCAACGTTCTGCGCACTCCGGCGAATAACAAACTGCGGAT
GGATGACGAACGCGGTCGGGAACATATCAAACTGAGTACCGAGTACGGCGGTAAAAGCCAGTTGAACCTCGGTCATCTCG
TTGATAGCCAGCGCCCACACCCAGATAAACGGGGAGAAGGCTTTGAGCTGCGAACCGACGACTGGGGAGCAATCCGGGCC
GGTAAGGGGTTGTTTATCAGTGCGGATAAACAGGCCCGGGCGGGCGGCGAGGTGCTGGCGATGGAGGCGGCGCTGAATCA
ACTTCAACAAGCGCAGACCTTAACCGAGGCATTATGCGGCGCGGCTGAAATGGCTAAAGCGGAACTGGCGGATTTGCAGC
AACAGAAGGCGTTGTTAAGTGAAACATTAGCCGAGCTGAAAAAATCCGCGTTGTTACTCTCCGCGCCAGAAGGGATCGCG
CAGACGACGGCAAAAAGCCTCCAGTTGGCGGCCGGGGAAAATATTATCGCCACCAGTGGGAAAAGTACCGATTTCAGCGT
ATTGAAAAAATTCACGGTAGCGGCAGGTGAAAGGATCAGCCTGTTTGCCCAAAAACTGGGCATCAAACTGTTTGCCAGCA
AAGGCCGGGTAGAGATTGAAGCGCAGGGTGATGAGATGGGGCTGGCGGCACTGAAAGATATCACGGTGAATAGCCATGAG
GGCAAAGTGATCATCAGTGCTAAACAGGAGATTTTGTTGGTTAGTGGCGGTGGTTATATCCGAATAGGGAATGGTCAGGT
GGAGTGTGGTGCGCCCAATCACATCATCCAACGGGCGGCAGTGTGGCAGAAGTTTGGCGGGCAGAGTGTTAGTCAGATGG
TTTCCCAACGTGAAACAGTGGATTTTTCCGTCACACCGCAGGTGCTCTGGCCTTTTGATGATATGCCGGTGAAGGATCAA
CATGCCTTTTTGCACAATCATGACGATAGTCAGCACTCTTCGATAACGGGTGCAGACGGTAAGACGGCTAAACAGAAGAA
ATTGGGTGTGGAAGCAATAAAGTTTTATTTAAAAGAAGGTAAGGAGTGA