Detailed information of component protein


Summary

Component ID T6CP000451
Component protein type TssF
T6SS ID (Type) T6SS00052 insolico (Type i2)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (587 a.a.); Nucleotide sequence (1761 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS16055
Coordinate (Strand) 3812054..3813814 (-)
NCBI ID WP_011147429.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.1e-184 1..581
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-586 MDDLTLRYYEAEMRYLREAGREFAKAHPDRAAALNLDKIVMRDPFVERLFEGFAFMIGSLREKLDDDLPELTEGLVSLLWPHYLRTIPSLSIVEFGMDWAQLKNSVQVKKGFEILSQPIGPSKTRCRYTTTQAVQLLPLALTDASLQEEPNGRSVIRLRFDCGTLVDWHQIDLSCLPLYLSADSPLAYALHRAFTLQTQQLYLRLPGQPDRQPFDGRFSPMGFGEEERLWPKGESSFSGYQLLLEYFTFREKFMFVTLCGLEKLTLPERTPWFELDVVLRESWPFDLPFSAEHIRLHCTPVINLFRLESDPLQLAPLQTEYLLYPVRYQDGHTEVYSVDEVSSSKREGHQYVPFSSFRHKGGMLRHDAPECYFHTRVKRGPSGLCDTWIILGGADFDDNELDEEDILSLTLTGTNGQLPRRALQDTLLNTAVNPPLAEFTVRNLCEPTLPCYPPNRDRFHWRVLSHLGSNFLSMMDNPEVLRGTLALYDWSDNEMNYRRLEAIVAVKHSLIERFEQGSLRRGVHIEVTLDSNGFAGAGDICLFGEMLSRFFALYTDIHLFNRLTLILQPTGERLLWEEQHCQNIPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9977 - -


  Protein sequence: 587 a.a.    

>T6CP000451 NC_005126:c3813814-3812054 [Photorhabdus laumondii subsp. laumondii TTO1] [TssF]
MDDLTLRYYEAEMRYLREAGREFAKAHPDRAAALNLDKIVMRDPFVERLFEGFAFMIGSLREKLDDDLPELTEGLVSLLW
PHYLRTIPSLSIVEFGMDWAQLKNSVQVKKGFEILSQPIGPSKTRCRYTTTQAVQLLPLALTDASLQEEPNGRSVIRLRF
DCGTLVDWHQIDLSCLPLYLSADSPLAYALHRAFTLQTQQLYLRLPGQPDRQPFDGRFSPMGFGEEERLWPKGESSFSGY
QLLLEYFTFREKFMFVTLCGLEKLTLPERTPWFELDVVLRESWPFDLPFSAEHIRLHCTPVINLFRLESDPLQLAPLQTE
YLLYPVRYQDGHTEVYSVDEVSSSKREGHQYVPFSSFRHKGGMLRHDAPECYFHTRVKRGPSGLCDTWIILGGADFDDNE
LDEEDILSLTLTGTNGQLPRRALQDTLLNTAVNPPLAEFTVRNLCEPTLPCYPPNRDRFHWRVLSHLGSNFLSMMDNPEV
LRGTLALYDWSDNEMNYRRLEAIVAVKHSLIERFEQGSLRRGVHIEVTLDSNGFAGAGDICLFGEMLSRFFALYTDIHLF
NRLTLILQPTGERLLWEEQHCQNIPG*

  Nucleotide sequence: 1761 bp    

>T6CP000451 NC_005126:c3813814-3812054 [Photorhabdus laumondii subsp. laumondii TTO1] [TssF]
ATGGATGATTTAACCCTGCGCTATTATGAGGCAGAAATGCGCTATCTGCGTGAAGCAGGCAGAGAGTTTGCTAAGGCCCA
TCCTGACCGAGCAGCCGCGCTTAATCTGGATAAAATCGTTATGCGTGATCCTTTTGTGGAGCGTCTGTTTGAAGGCTTTG
CTTTTATGATCGGGAGTCTGCGTGAGAAGCTGGATGATGACTTGCCGGAGTTGACGGAAGGGCTGGTTAGTTTGTTGTGG
CCGCATTACCTACGCACGATTCCGTCCCTTTCCATTGTTGAATTTGGGATGGATTGGGCACAGTTGAAAAATTCGGTACA
GGTGAAAAAGGGTTTTGAGATCCTTTCGCAACCGATCGGCCCAAGCAAGACTCGGTGTCGTTATACCACAACTCAGGCGG
TCCAGTTACTGCCTCTGGCACTGACCGACGCTTCCCTGCAAGAGGAACCGAATGGGCGTTCCGTGATTCGATTGCGTTTT
GACTGTGGAACACTGGTGGACTGGCACCAAATTGATTTGAGCTGTTTACCGCTGTATCTCAGTGCTGACAGTCCGCTGGC
CTATGCGTTACATCGAGCGTTTACGCTGCAAACCCAACAGCTTTACCTGCGTTTACCCGGTCAGCCCGATCGTCAGCCAT
TTGACGGCCGATTCTCACCAATGGGGTTTGGCGAAGAGGAAAGGTTATGGCCGAAAGGGGAAAGTTCGTTCAGTGGTTAT
CAACTACTGCTGGAGTATTTCACTTTCCGTGAAAAGTTTATGTTTGTTACGCTCTGTGGGCTGGAAAAGTTGACTCTCCC
CGAGAGAACGCCGTGGTTTGAGCTGGATGTGGTTCTGCGTGAAAGTTGGCCCTTTGATTTGCCATTTTCTGCCGAGCATA
TCCGTTTGCACTGTACCCCGGTGATTAATCTGTTTCGGTTGGAATCCGATCCGCTTCAACTGGCACCGTTGCAAACTGAG
TATTTGCTGTATCCGGTCCGCTATCAGGATGGGCATACCGAGGTTTATTCCGTGGATGAGGTGTCTTCTTCGAAACGCGA
GGGCCATCAGTATGTGCCGTTCAGTAGTTTCCGTCATAAAGGCGGCATGTTGCGCCATGATGCACCGGAGTGCTACTTCC
ATACCCGTGTGAAACGCGGGCCATCAGGTCTGTGTGACACCTGGATTATTCTGGGTGGAGCGGATTTTGATGATAATGAA
CTGGACGAAGAAGATATCTTATCTCTCACGTTGACTGGCACTAATGGTCAACTGCCGCGTAGGGCGTTGCAGGATACGCT
GTTGAATACCGCCGTTAATCCTCCGTTGGCGGAATTTACGGTACGTAACCTGTGTGAACCGACATTGCCCTGTTATCCAC
CCAATCGGGACCGTTTCCACTGGCGAGTGCTCAGCCATCTGGGTTCTAACTTTCTTAGCATGATGGATAACCCGGAAGTG
CTACGCGGGACATTAGCCCTGTATGACTGGTCCGACAATGAGATGAACTATCGCCGTCTGGAGGCGATTGTCGCGGTGAA
GCATTCGCTGATTGAGCGATTTGAGCAGGGAAGTTTGCGGCGGGGCGTGCACATTGAAGTGACATTGGATAGCAACGGCT
TTGCAGGTGCCGGTGATATCTGCTTGTTTGGCGAAATGCTCAGCCGCTTCTTTGCCTTGTACACCGATATTCATCTGTTT
AACCGACTTACGCTGATTTTACAACCTACGGGGGAACGACTGTTATGGGAAGAACAACACTGTCAGAACATTCCCGGTTG
A