Detailed information of component protein


Summary

Component ID T6CP011444
Component protein type TagL
T6SS ID (Type) T6SS00052 insolico (Type i2)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (576 a.a.); Nucleotide sequence (1728 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS16210
Coordinate (Strand) 3855809..3857536 (-)
NCBI ID WP_011147459.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 9.7e-16 444..540
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MSVMLR
Transmembrane helix 7-26 RVLWGWGAGLALLLCLVWLP
Outside 27-29 LSP
Transmembrane helix 30-49 VGRWVGAVIILLCTLMGLFY
Inside 50-323 RGRSQRRERLNSLSAVLPPESNRLPVVLVYSDIQDSLFGNELLRQTPQGYWLCLPTGTSLSDAIVSLLAARPSWGGQLSVMAVINPQQYRDAAVLAGWVRELRWQLSQARQRHAIPLPLLLAGYVAGPSRQPDDSPWFEWQSGRTTVTAWREGASFQPLADWLEQGTLAEQMARFQCGVELTGWADWMKAHVLPVCLTPEDGLSPCPPLAMVLKFVPALPHWVTGHVWQQWLQTKTALNRAGDPIATSATATLPFPDSVVRLLPTSALQTALQR
Transmembrane helix 324-346 AVGIALGLFLLAGITALGCSAWH
Outside 347-575 NRQLLRQVESDLLHYRSIAATDESRKAQAVAVLRDDADRLEKYHRDGVPWRLGLGLYQGARLPPPLHAAIAGYHAKPREKTPVTPGEPQTISLNSLALFDVGQAKLKAGSTKVLVNALINIRAKPGWMILIAGHTDSTGDATKNQVLSLARAEAVRDWMLQTSDISPACFTVQGKGATSPIATNTTAAGRAANRRVEIRLIPHVAACARPQKVPDTLSTTSPLPATSLK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9879 - -


  Protein sequence: 576 a.a.    

>T6CP011444 NC_005126:c3857536-3855809 [Photorhabdus laumondii subsp. laumondii TTO1] [TagL]
MSVMLRRVLWGWGAGLALLLCLVWLPLSPVGRWVGAVIILLCTLMGLFYRGRSQRRERLNSLSAVLPPESNRLPVVLVYS
DIQDSLFGNELLRQTPQGYWLCLPTGTSLSDAIVSLLAARPSWGGQLSVMAVINPQQYRDAAVLAGWVRELRWQLSQARQ
RHAIPLPLLLAGYVAGPSRQPDDSPWFEWQSGRTTVTAWREGASFQPLADWLEQGTLAEQMARFQCGVELTGWADWMKAH
VLPVCLTPEDGLSPCPPLAMVLKFVPALPHWVTGHVWQQWLQTKTALNRAGDPIATSATATLPFPDSVVRLLPTSALQTA
LQRAVGIALGLFLLAGITALGCSAWHNRQLLRQVESDLLHYRSIAATDESRKAQAVAVLRDDADRLEKYHRDGVPWRLGL
GLYQGARLPPPLHAAIAGYHAKPREKTPVTPGEPQTISLNSLALFDVGQAKLKAGSTKVLVNALINIRAKPGWMILIAGH
TDSTGDATKNQVLSLARAEAVRDWMLQTSDISPACFTVQGKGATSPIATNTTAAGRAANRRVEIRLIPHVAACARPQKVP
DTLSTTSPLPATSLK*

  Nucleotide sequence: 1728 bp    

>T6CP011444 NC_005126:c3857536-3855809 [Photorhabdus laumondii subsp. laumondii TTO1] [TagL]
ATGAGTGTCATGTTGCGACGGGTGTTATGGGGATGGGGGGCCGGGCTGGCGCTGCTGCTCTGTCTGGTCTGGTTGCCCTT
ATCGCCGGTGGGCCGGTGGGTGGGGGCAGTCATTATCCTGCTCTGTACGCTGATGGGGCTGTTTTATCGCGGGCGTTCTC
AACGGCGAGAGCGCCTTAACAGCCTGTCAGCGGTACTGCCGCCTGAAAGTAATCGCCTGCCGGTGGTGTTGGTATATAGC
GACATTCAGGACAGCTTGTTTGGTAATGAACTGTTGCGTCAGACGCCACAAGGCTATTGGTTGTGCTTACCGACAGGGAC
TTCTCTGTCTGACGCGATAGTTAGCTTGCTGGCCGCCCGGCCCTCTTGGGGCGGTCAGTTAAGTGTGATGGCGGTGATAA
ACCCGCAGCAATACCGTGACGCCGCCGTACTGGCTGGTTGGGTGCGAGAACTACGCTGGCAGTTATCTCAAGCGCGTCAA
CGACATGCTATCCCGCTGCCTTTACTGCTAGCGGGTTACGTAGCCGGGCCGTCCCGACAACCTGACGATTCACCGTGGTT
TGAGTGGCAATCAGGACGAACCACGGTAACGGCTTGGCGCGAAGGTGCCTCTTTTCAACCACTCGCGGATTGGTTGGAAC
AGGGCACGCTGGCAGAACAGATGGCACGTTTTCAGTGTGGGGTTGAGTTGACTGGCTGGGCTGATTGGATGAAGGCGCAT
GTATTGCCCGTCTGCCTGACCCCGGAAGATGGCTTATCTCCTTGTCCGCCGCTGGCGATGGTATTGAAGTTTGTACCGGC
ATTACCGCATTGGGTAACCGGCCATGTCTGGCAACAGTGGTTACAAACCAAAACGGCGCTGAACAGGGCGGGCGATCCGA
TAGCCACATCGGCTACCGCTACATTGCCATTCCCGGACAGTGTAGTGCGGCTGCTGCCCACCAGTGCGCTACAAACAGCG
CTACAGCGGGCCGTGGGGATAGCTCTGGGGCTGTTTCTGCTGGCGGGCATAACAGCGCTAGGTTGCTCGGCCTGGCATAA
CCGACAGTTATTGCGTCAGGTGGAGAGTGACCTGCTGCATTACCGGTCTATTGCCGCGACGGATGAGAGCCGCAAGGCAC
AGGCGGTGGCGGTACTGAGGGATGATGCCGATCGGCTTGAGAAGTATCACCGGGATGGCGTGCCGTGGCGTCTGGGATTG
GGGCTATATCAAGGAGCACGATTACCTCCGCCATTGCATGCGGCCATTGCCGGTTACCACGCTAAACCGAGGGAGAAAAC
GCCGGTAACGCCGGGGGAACCACAGACCATCAGCCTTAACAGTCTGGCGCTGTTTGATGTGGGACAGGCGAAACTGAAAG
CGGGTTCGACCAAAGTATTAGTCAACGCACTAATCAACATCCGTGCCAAACCGGGCTGGATGATCCTCATCGCCGGACAT
ACTGATTCCACCGGTGATGCCACGAAAAATCAGGTGCTGTCACTGGCACGCGCCGAAGCAGTACGCGATTGGATGTTACA
AACCAGCGACATATCGCCGGCTTGCTTCACTGTACAAGGCAAGGGAGCAACGAGTCCAATTGCGACTAACACAACCGCTG
CGGGGCGAGCTGCCAATCGCAGGGTTGAAATCCGTCTGATACCGCATGTGGCCGCCTGTGCGCGACCGCAGAAAGTACCG
GACACCTTATCAACAACGTCGCCGCTACCGGCGACATCACTTAAGTAA