Detailed information of component protein


Summary

Component ID T6CP000453
Component protein type TssI
T6SS ID (Type) T6SS00052 insolico (Type i2)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (842 a.a.); Nucleotide sequence (2526 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS16115
Coordinate (Strand) 3827457..3829982 (-)
NCBI ID WP_011147441.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 7.9e-50 34..358
DUF2345 PF10106.11 4.1e-49 621..765
T6SS_Vgr PF13296.8 1.6e-37 498..602
Phage_base_V PF04717.14 1.6e-10 412..478
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-841 MTNLTPMIIFDHSRYRLKVWRNKAPLDVLAFTGQEALSQPFRYAIEFTSAEKGIEPAQMLMQQASFTLTSPAINPGIRWMPIVPPEPLRSVYGVISGFKLLSTSRDESRYEVTLEPRLALLARSHQYAIYQKLSVPEIVEKILRERHGFRGQDFLFSLAYSYPRREQVMQYGEDDLRFIQRMLAEVGIWYKVTADDRLKIDVVEFYDDQRDYQFNVYLPARNPSGMHGEEDAVVWGMETAYQVVEGKIATRNYDYHDARPYPGLNTEADVTRGDRTTYGEAYHYRDDYRIPGDRYAYQPETESGVFYARLHHERYLNQRIRLRGMTTSATLVPGQELKVKGDAPETFRKGAIITQITNSARRDSSFEMTFTAIPYSETVCFRPERVPKPVMAGTIPARVSSTKVNDTYGDIDKDGLYRVVFNFDREKWPQGGESLWVRLARPYAGENYGFHWPLLEGTEVAIAFEGGDPDRPYIAHALHDSVHPDHVNLYNYKRNVLRTPANNKLRMDDERGREHIKLSTEYGGKSQLNLGHLVDSQRPHPDKRGEGFELRTDDWGAIRAGKGLFISADKQARAGGEVLEMEAALNQLQQAQTLTEALYGAAEMAKAELADLQQQKALLSETLAELKKSALLLSAPEGIAQTTAKSLQLAAGENIIVTSGKSTDFSVLKKFTVAAGERISLFAQKLGIKLFASKGRVDIEAQGDEMGLAALKDITVNSHEGKVIISAKQEILLVSGGGYIRIGNGQVECGAPNHIIQRAAVWQKFDGQSVSQTVQQWQTANYAVTPKAVRAYKISPLDRQNMQFHAEDGGVQALSTIQNGKTPLQKQVGVEISQLKIKDEE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9934 - -


  Protein sequence: 842 a.a.    

>T6CP000453 NC_005126:c3829982-3827457 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
MTNLTPMIIFDHSRYRLKVWRNKAPLDVLAFTGQEALSQPFRYAIEFTSAEKGIEPAQMLMQQASFTLTSPAINPGIRWM
PIVPPEPLRSVYGVISGFKLLSTSRDESRYEVTLEPRLALLARSHQYAIYQKLSVPEIVEKILRERHGFRGQDFLFSLAY
SYPRREQVMQYGEDDLRFIQRMLAEVGIWYKVTADDRLKIDVVEFYDDQRDYQFNVYLPARNPSGMHGEEDAVVWGMETA
YQVVEGKIATRNYDYHDARPYPGLNTEADVTRGDRTTYGEAYHYRDDYRIPGDRYAYQPETESGVFYARLHHERYLNQRI
RLRGMTTSATLVPGQELKVKGDAPETFRKGAIITQITNSARRDSSFEMTFTAIPYSETVCFRPERVPKPVMAGTIPARVS
STKVNDTYGDIDKDGLYRVVFNFDREKWPQGGESLWVRLARPYAGENYGFHWPLLEGTEVAIAFEGGDPDRPYIAHALHD
SVHPDHVNLYNYKRNVLRTPANNKLRMDDERGREHIKLSTEYGGKSQLNLGHLVDSQRPHPDKRGEGFELRTDDWGAIRA
GKGLFISADKQARAGGEVLEMEAALNQLQQAQTLTEALYGAAEMAKAELADLQQQKALLSETLAELKKSALLLSAPEGIA
QTTAKSLQLAAGENIIVTSGKSTDFSVLKKFTVAAGERISLFAQKLGIKLFASKGRVDIEAQGDEMGLAALKDITVNSHE
GKVIISAKQEILLVSGGGYIRIGNGQVECGAPNHIIQRAAVWQKFDGQSVSQTVQQWQTANYAVTPKAVRAYKISPLDRQ
NMQFHAEDGGVQALSTIQNGKTPLQKQVGVEISQLKIKDEE*

  Nucleotide sequence: 2526 bp    

>T6CP000453 NC_005126:c3829982-3827457 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
ATGACGAACCTAACACCGATGATCATCTTTGATCACAGCCGTTACAGACTAAAAGTGTGGCGCAATAAAGCACCGCTGGA
TGTGCTGGCCTTTACCGGGCAGGAAGCCTTAAGCCAGCCGTTTCGCTATGCCATTGAATTCACCAGTGCGGAGAAAGGGA
TTGAACCGGCACAGATGCTGATGCAGCAAGCCTCATTTACCCTGACCTCGCCTGCGATCAATCCGGGGATACGGTGGATG
CCGATTGTGCCGCCGGAGCCGCTGCGCTCGGTTTACGGGGTGATCAGCGGCTTTAAACTGCTCTCCACTTCGCGGGACGA
AAGCCGTTACGAAGTGACGCTGGAGCCCCGGCTGGCGCTGCTGGCGAGAAGCCATCAATACGCTATTTACCAAAAACTGT
CCGTGCCGGAGATTGTGGAGAAAATCCTGCGGGAGCGACATGGTTTTCGCGGGCAGGACTTCCTGTTCAGTCTGGCGTAC
AGCTACCCGAGGCGGGAACAGGTGATGCAGTATGGCGAAGATGACCTGCGCTTTATCCAACGCATGCTGGCGGAAGTGGG
TATCTGGTACAAAGTGACGGCGGATGACCGGTTAAAGATCGATGTGGTGGAGTTTTACGACGACCAGCGTGACTACCAGT
TCAATGTCTACCTGCCTGCCCGCAATCCGTCAGGTATGCACGGCGAGGAGGACGCGGTGGTGTGGGGCATGGAGACCGCG
TATCAGGTGGTGGAGGGAAAAATTGCGACTCGGAATTATGACTACCACGATGCCCGGCCGTATCCCGGCTTGAACACCGA
GGCGGATGTGACACGGGGCGATCGAACGACTTATGGCGAAGCGTACCATTACCGTGACGACTACCGAATACCCGGTGATC
GTTACGCCTATCAACCGGAGACGGAAAGCGGGGTGTTTTATGCCCGTTTGCATCACGAACGTTACCTGAATCAACGCATC
CGCCTGCGGGGAATGACCACCTCCGCCACGCTGGTGCCGGGACAGGAGTTGAAAGTGAAAGGTGACGCCCCGGAAACGTT
TCGCAAAGGGGCGATCATCACCCAGATCACCAACAGTGCCCGCCGGGACAGCAGTTTTGAGATGACATTCACTGCCATTC
CCTATTCCGAGACCGTGTGCTTTCGCCCGGAGCGGGTGCCGAAACCGGTGATGGCCGGCACGATACCCGCGCGGGTGAGC
AGTACCAAAGTGAATGATACCTACGGCGATATCGACAAAGACGGCTTATATCGGGTGGTGTTTAATTTTGACCGGGAGAA
ATGGCCGCAAGGCGGCGAAAGCTTGTGGGTGCGTCTGGCGCGCCCGTATGCGGGGGAGAACTATGGTTTTCACTGGCCGT
TGCTGGAAGGCACCGAAGTCGCGATCGCCTTTGAAGGGGGCGACCCGGACCGGCCCTATATTGCCCATGCTCTGCACGAC
TCAGTGCACCCGGATCACGTCAATCTCTACAACTACAAACGCAACGTTCTGCGCACCCCGGCGAATAACAAACTGCGGAT
GGATGACGAACGCGGTCGGGAACATATCAAACTGAGTACCGAGTACGGCGGTAAAAGCCAGTTAAATCTCGGCCATCTCG
TTGATAGCCAGCGCCCACACCCGGATAAACGGGGAGAAGGCTTTGAGCTGCGAACCGACGACTGGGGCGCGATCCGGGCC
GGTAAGGGGTTGTTTATCAGTGCGGATAAACAGGCCCGCGCGGGCGGTGAAGTGCTGGAGATGGAGGCGGCGCTGAATCA
ACTTCAACAAGCGCAGACCTTAACCGAGGCATTATACGGCGCGGCTGAAATGGCTAAAGCGGAACTGGCGGATTTGCAGC
AACAGAAGGCGCTGTTAAGTGAAACGTTAGCCGAGCTGAAAAAATCCGCGTTGTTACTCTCCGCGCCAGAAGGGATCGCG
CAGACGACGGCAAAAAGCCTCCAGTTGGCGGCCGGGGAAAATATTATCGTCACCAGTGGGAAAAGTACCGATTTCAGCGT
ATTGAAAAAATTCACGGTGGCGGCGGGTGAAAGGATCAGCCTGTTTGCCCAAAAACTGGGCATCAAACTGTTTGCCAGCA
AAGGCCGGGTAGATATTGAAGCGCAGGGTGATGAGATGGGGCTGGCGGCACTGAAAGATATCACGGTGAATAGCCATGAG
GGAAAAGTGATCATCAGCGCCAAACAGGAGATCTTGCTGGTCAGTGGCGGTGGTTATATCCGAATAGGAAATGGTCAGGT
GGAGTGTGGTGCGCCCAATCACATCATCCAACGGGCGGCAGTGTGGCAGAAGTTTGACGGGCAGAGTGTTAGTCAGACAG
TACAGCAATGGCAAACCGCGAATTATGCGGTAACGCCGAAGGCTGTACGGGCTTATAAGATTTCTCCGTTAGACCGTCAA
AATATGCAGTTCCATGCCGAAGATGGCGGCGTACAGGCATTATCAACCATACAGAATGGAAAAACCCCTTTGCAAAAGCA
GGTTGGGGTGGAAATCAGTCAATTGAAAATAAAAGATGAGGAGTAA