Detailed information of component protein


Summary

Component ID T6CP000458
Component protein type TssK
T6SS ID (Type) T6SS00052 insolico (Type i2)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (450 a.a.); Nucleotide sequence (1350 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS16240
Coordinate (Strand) 3860551..3861900 (-)
NCBI ID WP_011147460.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 9e-136 18..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-449 MKIERPLWVTGTILSPQQFQQQARWEAYANESIARLGLAHPWGVLTAVFDQHTLALGQLKADHLCVRFADGSLIDTDQADRLPPVLELAAVLPTDAQQVTVLLALPYTYANGGNCLKPDERADRPVRYQQEWVPVQDEFSDRSESMAVARYAISLRFDSMENGQYLTCPVARLLRDAQGKWIFDEQFVPPLLRLSAHAGSIARLDQLLTQLRAKQARLMAMRRESNERMADFAVADVSLFWLLNALNSYEPILSDFKAHPDVHPELFYREAVRLAGSLLTFSLDHNASVIPRYQHDNLTAVFPPLFDLLRQLLEISLPSRMVTIELKKPSEQQWIATLHDARLCEAADFYLSVRSSIPAHQLYTRFPLLCKAGAPDEVDRMISRSLTGIPLVALSHVPAAIPLRLENQYFALDLTHPAGKAMLAAGSCAFYVPGVLGDIQLELFAVLRT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9338 - -


  Protein sequence: 450 a.a.    

>T6CP000458 NC_005126:c3861900-3860551 [Photorhabdus laumondii subsp. laumondii TTO1] [TssK]
MKIERPLWVTGTILSPQQFQQQARWEAYANESIARLGLAHPWGVLTAVFDQHTLALGQLKADHLCVRFADGSLIDTDQAD
RLPPVLELAAVLPTDAQQVTVLLALPYTYANGGNCLKPDERADRPVRYQQEWVPVQDEFSDRSESMAVARYAISLRFDSM
ENGQYLTCPVARLLRDAQGKWIFDEQFVPPLLRLSAHAGSIARLDQLLTQLRAKQARLMAMRRESNERMADFAVADVSLF
WLLNALNSYEPILSDFKAHPDVHPELFYREAVRLAGSLLTFSLDHNASVIPRYQHDNLTAVFPPLFDLLRQLLEISLPSR
MVTIELKKPSEQQWIATLHDARLCEAADFYLSVRSSIPAHQLYTRFPLLCKAGAPDEVDRMISRSLTGIPLVALSHVPAA
IPLRLENQYFALDLTHPAGKAMLAAGSCAFYVPGVLGDIQLELFAVLRT*

  Nucleotide sequence: 1350 bp    

>T6CP000458 NC_005126:c3861900-3860551 [Photorhabdus laumondii subsp. laumondii TTO1] [TssK]
ATGAAAATTGAGCGCCCGCTATGGGTAACAGGAACCATCTTGTCTCCCCAACAGTTTCAGCAGCAGGCTCGTTGGGAGGC
ATATGCCAATGAGTCGATTGCTCGTCTGGGACTGGCGCATCCTTGGGGCGTGCTGACCGCGGTGTTTGATCAACACACCT
TAGCGTTGGGGCAGTTGAAAGCGGATCACCTGTGTGTGCGTTTTGCCGATGGATCGCTGATTGACACCGATCAGGCCGAT
CGCCTACCGCCGGTGCTGGAATTGGCCGCCGTTTTGCCGACAGATGCGCAGCAGGTCACGGTCTTACTGGCATTGCCGTA
CACTTACGCCAATGGCGGTAACTGTCTTAAACCCGATGAACGCGCCGATCGTCCGGTGCGTTACCAGCAGGAGTGGGTAC
CGGTACAGGATGAATTCAGTGATCGCAGTGAATCGATGGCGGTTGCTCGTTATGCGATATCGCTGCGTTTTGACAGCATG
GAAAACGGTCAATATCTCACCTGCCCGGTGGCGCGTCTGTTGCGCGATGCTCAAGGAAAATGGATTTTTGATGAGCAATT
TGTGCCGCCATTACTGCGTCTTAGCGCACATGCCGGTTCGATAGCTCGGCTCGATCAGTTGTTGACGCAGTTACGCGCTA
AACAGGCTCGATTGATGGCAATGCGCCGAGAGAGCAATGAGCGGATGGCGGATTTTGCGGTGGCGGATGTGTCGTTGTTC
TGGCTGCTTAATGCGCTTAACAGTTATGAACCGATATTGAGTGATTTTAAGGCCCATCCAGATGTGCATCCAGAACTGTT
CTACCGTGAAGCGGTAAGGCTGGCGGGCAGTCTGTTGACCTTTTCACTGGACCATAACGCCAGCGTGATCCCGCGTTATC
AGCACGATAATTTGACGGCGGTATTCCCGCCGTTATTTGACTTGCTGAGACAATTGCTGGAGATCAGCTTGCCGTCGCGG
ATGGTGACGATTGAGTTGAAGAAACCATCGGAACAGCAGTGGATAGCCACTCTCCACGATGCCCGTTTATGTGAAGCGGC
GGATTTTTATCTCTCTGTCCGCTCTTCCATACCGGCACACCAGTTGTACACCCGGTTCCCGCTGTTATGTAAAGCCGGTG
CGCCGGATGAGGTTGATCGGATGATTAGCCGGTCATTAACCGGCATCCCCTTAGTCGCACTTAGCCATGTCCCGGCCGCG
ATCCCGTTGCGGCTGGAGAACCAGTACTTTGCCCTTGATCTCACCCATCCGGCGGGCAAAGCCATGCTGGCGGCAGGGAG
CTGTGCTTTCTACGTGCCCGGAGTACTGGGCGATATTCAGCTTGAACTGTTTGCGGTATTGAGGACATGA