Detailed information of component protein


Summary

Component ID T6CP000454
Component protein type TssM
T6SS ID (Type) T6SS00052 insolico (Type i2)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (1129 a.a.); Nucleotide sequence (3387 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) PLU_RS16120
Coordinate (Strand) 3830821..3834207 (-)
NCBI ID WP_165828660.1
RefSeq NC_005126
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 8.3e-69 406..722
IcmF_C PF06744.14 5.3e-21 982..1086

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-16 MALQENKIPPISVVKT
Transmembrane helix 17-39 LILLIGTITLLVSLAGLGWWVWG
Outside 40-53 EHRTTDAETFNHLL
Transmembrane helix 54-76 WVCGIAWVLTVVVSMLGFITVTL
Inside 77-357 FVKNKVTDVKSDTRPLLPASEPYDYGDLGDRMRLRYGRFWWYKVRILLVVGEVEQVEAIAPGLTTTHWQEGYRTLLLWGGSLQAEPNTAQLMALRRLRRYRPLNAIVWALTENQSAQPVWMDKALRMLQKQAHQLRWQAPVYLWQVCHSTWSQEGRITQTVGCFFPERCTPDIVATQLQTLVDPLRERGMQQLLEKTAHDFLCRLSANLKQQGIAHWQQVLTPWLAEYGDVVSLRGLMFSLPLKAQTTRLPQIWLPDTAWQGVLEGSRCFHGRRVGMLHTQ
Transmembrane helix 358-380 TVCRGLIVLGLLWGAGMMLSFFT
Outside 381-1128 NRDQLAVVQAAVTDLKAQPENSDAQLMALKALRNEVDRLQDRAEHGVPWYERFGLSQNQKLLTAVVPDYAQVNNRLIRDKAAAVLHAKLSALVNLPPGSPLRAKRAKAGHDQLKAYLMMAQPEKVDAAFLTRILDENEPERAGIAPAVWLDTAWDLWSFYAENLAAHPEWRITPDKALIKQVRQLLLIQPGKHNAEAALYQQMLQSVEKNYSDLTLRQMTGDTDAARLFTTSHVIPGMFTRQAWEGGIQKAIAEAVASRKEAIDWVLSDNRQAVSASVSPEELKARLTARYFTDFAGAWQDFLNSLRWNKTRNLSDVIDQLTLMADGRQSPLIALMNTLAYQGETGQQGPSLSDSLVKSAKTLLNKKTPRMINQQTAGLHGPMDETFGPLLALMGENQAEGRIKADSTLNLQTFLTRVTDVRLKLQQMNNSDDPPAMANALAKTVFEGKSTDLTDTQGYGRLIAASLGGQWRGFGQTLFVEPLAQAWQGVLKPATANLNSQWQTAIVDNWDRAFAGRYPFAGGESEISLPMLGQFIRSDSGRIEQFLTRQLGGILHKAGNQWVVDEVNGQGVQINPDFLKAINQLSQLSDLLFADGSQGLRFELRARAVRDVVETDLTIDGQKLRYFNQMESWQSFRWPGETYKPGVMLTWTSVNAGARLFGDYQGNWGLIRWLAQAKAEKLDESRYRLIFTAPDGLPLTWILRTELGEGPLALLKLRGFKLPKNIFVVTPGNHTTISAVNDDDLIEE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9986 - -



  Protein sequence: 1129 a.a.    

>T6CP000454 NC_005126:c3834207-3830821 [Photorhabdus laumondii subsp. laumondii TTO1] [TssM]
MALQENKIPPISVVKTLILLIGTITLLVSLAGLGWWVWGEHRTTDAETFNHLLWVCGIAWVLTVVVSMLGFITVTLFVKN
KVTDVKSDTRPLLPASEPYDYGDLGDRMRLRYGRFWWYKVRILLVVGEVEQVEAIAPGLTTTHWQEGYRTLLLWGGSLQA
EPNTAQLMALRRLRRYRPLNAIVWALTENQSAQPVWMDKALRMLQKQAHQLRWQAPVYLWQVCHSTWSQEGRITQTVGCF
FPERCTPDIVATQLQTLVDPLRERGMQQLLEKTAHDFLCRLSANLKQQGIAHWQQVLTPWLAEYGDVVSLRGLMFSLPLK
AQTTRLPQIWLPDTAWQGVLEGSRCFHGRRVGMLHTQTVCRGLIVLGLLWGAGMMLSFFTNRDQLAVVQAAVTDLKAQPE
NSDAQLMALKALRNEVDRLQDRAEHGVPWYERFGLSQNQKLLTAVVPDYAQVNNRLIRDKAAAVLHAKLSALVNLPPGSP
LRAKRAKAGHDQLKAYLMMAQPEKVDAAFLTRILDENEPERAGIAPAVWLDTAWDLWSFYAENLAAHPEWRITPDKALIK
QVRQLLLIQPGKHNAEAALYQQMLQSVEKNYSDLTLRQMTGDTDAARLFTTSHVIPGMFTRQAWEGGIQKAIAEAVASRK
EAIDWVLSDNRQAVSASVSPEELKARLTARYFTDFAGAWQDFLNSLRWNKTRNLSDVIDQLTLMADGRQSPLIALMNTLA
YQGETGQQGPSLSDSLVKSAKTLLNKKTPRMINQQTAGLHGPMDETFGPLLALMGENQAEGRIKADSTLNLQTFLTRVTD
VRLKLQQMNNSDDPPAMANALAKTVFEGKSTDLTDTQGYGRLIAASLGGQWRGFGQTLFVEPLAQAWQGVLKPATANLNS
QWQTAIVDNWDRAFAGRYPFAGGESEISLPMLGQFIRSDSGRIEQFLTRQLGGILHKAGNQWVVDEVNGQGVQINPDFLK
AINQLSQLSDLLFADGSQGLRFELRARAVRDVVETDLTIDGQKLRYFNQMESWQSFRWPGETYKPGVMLTWTSVNAGARL
FGDYQGNWGLIRWLAQAKAEKLDESRYRLIFTAPDGLPLTWILRTELGEGPLALLKLRGFKLPKNIFVVTPGNHTTISAV
NDDDLIEE*

  Nucleotide sequence: 3387 bp    

>T6CP000454 NC_005126:c3834207-3830821 [Photorhabdus laumondii subsp. laumondii TTO1] [TssM]
ATGGCACTGCAAGAGAATAAAATACCGCCTATTTCGGTGGTGAAGACACTTATCTTACTGATAGGCACCATTACCCTGCT
GGTTTCGTTGGCTGGTCTGGGATGGTGGGTTTGGGGAGAACACCGAACCACTGATGCCGAAACTTTCAACCATCTGTTGT
GGGTTTGTGGAATAGCTTGGGTGCTCACTGTGGTGGTGAGTATGCTAGGTTTTATCACGGTAACGTTGTTTGTCAAAAAC
AAAGTCACCGATGTGAAGTCCGATACCCGGCCACTTTTGCCAGCCAGCGAACCGTATGATTATGGTGATTTGGGCGATCG
CATGCGCCTCCGTTACGGGCGGTTCTGGTGGTATAAAGTCCGCATTTTACTGGTGGTGGGCGAAGTGGAACAGGTGGAAG
CCATCGCGCCGGGGCTGACCACGACGCACTGGCAGGAGGGTTATCGCACGCTGTTGCTCTGGGGCGGCAGTTTGCAAGCG
GAACCGAATACCGCTCAATTGATGGCCCTGCGTCGCTTGCGCCGTTACCGCCCGCTCAATGCCATTGTCTGGGCGCTGAC
CGAAAACCAAAGTGCGCAGCCGGTGTGGATGGATAAAGCTTTGCGGATGTTACAAAAACAGGCCCACCAGTTGCGCTGGC
AGGCCCCGGTCTACCTGTGGCAGGTGTGTCACAGTACCTGGTCTCAGGAAGGTCGTATCACTCAGACCGTCGGCTGCTTT
TTTCCTGAACGCTGTACCCCGGATATCGTGGCGACACAGTTACAAACGTTGGTTGACCCGTTGCGCGAGCGCGGGATGCA
GCAACTGTTGGAGAAGACGGCCCACGATTTTCTTTGTCGTCTGTCCGCGAACTTGAAACAACAGGGGATTGCGCACTGGC
AACAGGTCCTGACGCCGTGGTTAGCGGAGTATGGTGATGTGGTGTCGCTGCGGGGTTTGATGTTCAGTTTGCCGCTTAAA
GCGCAGACGACTCGCCTCCCGCAGATCTGGCTGCCCGACACGGCATGGCAGGGGGTGTTGGAGGGCAGTCGTTGTTTCCA
CGGTCGGCGGGTGGGCATGCTCCACACACAGACCGTTTGTCGTGGCCTGATAGTGCTGGGCTTGTTATGGGGGGCCGGAA
TGATGCTCTCCTTTTTCACCAACCGTGACCAGCTAGCTGTGGTGCAGGCGGCGGTCACTGACCTGAAAGCTCAGCCGGAG
AATTCTGATGCCCAGTTGATGGCCTTAAAGGCGCTGCGTAACGAGGTGGACCGGCTGCAAGACCGGGCTGAACACGGTGT
ACCGTGGTATGAGCGCTTTGGTTTGAGTCAGAATCAGAAACTGTTGACGGCAGTGGTGCCCGATTATGCGCAGGTTAATA
ACCGCCTGATACGAGACAAAGCCGCTGCGGTGTTGCATGCGAAACTGAGTGCGCTGGTGAATTTACCGCCGGGCAGCCCT
TTGCGGGCTAAGCGGGCGAAAGCCGGTCATGACCAGTTGAAAGCCTACCTGATGATGGCGCAGCCGGAAAAAGTGGATGC
TGCGTTTTTAACCCGGATACTGGATGAAAATGAACCCGAGCGGGCCGGTATTGCCCCCGCTGTCTGGTTGGATACGGCGT
GGGATTTGTGGAGTTTTTATGCGGAGAATCTGGCCGCGCATCCCGAATGGCGGATAACCCCGGATAAGGCGTTGATTAAA
CAGGTGCGTCAGTTGTTGCTGATCCAGCCAGGTAAGCACAATGCCGAAGCGGCGCTTTACCAGCAGATGCTGCAATCAGT
GGAGAAAAATTATTCGGACCTGACGTTAAGGCAGATGACCGGCGACACCGATGCGGCGCGGCTGTTTACCACCTCTCACG
TGATACCGGGGATGTTTACCCGTCAGGCGTGGGAAGGCGGGATACAAAAGGCGATAGCGGAGGCGGTGGCGTCACGTAAA
GAGGCAATTGACTGGGTGCTGAGTGATAACCGTCAGGCAGTCTCGGCTTCGGTATCGCCCGAAGAGCTGAAAGCCCGTTT
GACCGCCCGTTACTTTACCGATTTTGCCGGGGCGTGGCAGGATTTTCTCAACAGCCTGCGCTGGAACAAAACCCGTAACC
TGTCGGATGTCATCGACCAGCTAACGTTGATGGCGGATGGGCGGCAGTCTCCGCTGATTGCGCTGATGAACACGCTGGCC
TATCAGGGCGAAACCGGGCAACAGGGGCCGAGTTTATCGGACTCATTGGTGAAATCCGCTAAAACGTTATTGAATAAAAA
AACGCCGCGAATGATTAATCAACAGACGGCTGGCTTGCACGGGCCGATGGATGAAACCTTTGGGCCGTTGTTGGCGCTGA
TGGGAGAAAATCAGGCAGAAGGAAGAATCAAGGCGGACAGTACCCTGAATTTACAAACCTTCCTGACGCGGGTAACCGAC
GTGCGTCTGAAACTGCAACAGATGAACAACAGCGACGACCCACCGGCAATGGCGAATGCGCTGGCTAAAACGGTATTTGA
AGGGAAAAGCACTGATTTGACCGATACGCAGGGCTATGGGCGCTTGATAGCCGCCAGTCTGGGCGGCCAATGGCGTGGTT
TTGGTCAGACGCTGTTTGTCGAGCCATTAGCGCAGGCGTGGCAGGGGGTATTGAAACCGGCGACGGCGAATCTGAATAGC
CAGTGGCAGACGGCGATAGTGGACAACTGGGATCGGGCATTTGCGGGTCGTTATCCGTTTGCCGGTGGCGAAAGTGAAAT
CTCATTGCCGATGTTGGGGCAGTTTATCCGGTCAGATTCAGGGCGGATAGAGCAGTTCTTGACGCGTCAGTTAGGCGGGA
TACTGCATAAAGCGGGTAACCAGTGGGTAGTGGATGAGGTGAATGGTCAGGGCGTACAGATTAACCCGGATTTTCTAAAG
GCGATAAATCAGCTCAGTCAGTTATCGGACCTGTTGTTTGCGGATGGCAGTCAGGGATTGCGGTTTGAACTGCGGGCCAG
AGCGGTGCGGGATGTGGTGGAAACTGACCTGACGATAGATGGGCAGAAACTGCGTTATTTTAACCAGATGGAAAGTTGGC
AAAGTTTTCGCTGGCCGGGAGAGACCTATAAACCGGGTGTGATGCTGACGTGGACCAGTGTCAATGCCGGGGCGAGATTG
TTTGGTGATTATCAGGGGAACTGGGGACTCATCCGCTGGCTGGCGCAGGCGAAAGCGGAGAAGCTGGATGAAAGCCGTTA
CCGACTGATATTTACCGCGCCGGATGGATTACCGTTAACCTGGATTTTGCGCACAGAATTGGGCGAAGGGCCGCTGGCGT
TATTAAAACTGCGCGGATTTAAATTGCCGAAAAATATCTTTGTAGTGACGCCGGGTAATCACACGACAATATCAGCGGTA
AATGACGATGATTTGATAGAGGAATAG