Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYE20_RS17295 Genome accession   NZ_CP150252
Coordinates   3232928..3233572 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0416     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3227928..3238572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE20_RS17260 (NYE20_17260) - 3229120..3229551 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NYE20_RS17265 (NYE20_17265) - 3229551..3229892 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NYE20_RS17270 (NYE20_17270) - 3229885..3231366 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  NYE20_RS17275 (NYE20_17275) - 3231372..3231848 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NYE20_RS17280 (NYE20_17280) - 3231848..3232132 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NYE20_RS17285 (NYE20_17285) mnhG 3232116..3232490 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NYE20_RS17290 (NYE20_17290) - 3232529..3232909 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  NYE20_RS17295 (NYE20_17295) comA 3232928..3233572 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NYE20_RS17300 (NYE20_17300) comP 3233653..3235971 (-) 2319 WP_161621287.1 sensor histidine kinase Regulator
  NYE20_RS17305 (NYE20_17305) comX 3235991..3236167 (-) 177 WP_041906074.1 competence pheromone ComX -
  NYE20_RS17310 (NYE20_17310) - 3236182..3237039 (-) 858 WP_309248341.1 polyprenyl synthetase family protein -
  NYE20_RS17315 (NYE20_17315) degQ 3237207..3237347 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NYE20_RS17320 (NYE20_17320) - 3237569..3237694 (+) 126 WP_161621781.1 hypothetical protein -
  NYE20_RS17325 (NYE20_17325) - 3237810..3238178 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=967903 NYE20_RS17295 WP_003220716.1 3232928..3233572(-) (comA) [Bacillus sp. FSL R5-0416]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=967903 NYE20_RS17295 WP_003220716.1 3232928..3233572(-) (comA) [Bacillus sp. FSL R5-0416]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment