Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   L6419_RS00455 Genome accession   NZ_AP025332
Coordinates   75459..75929 (+) Length   156 a.a.
NCBI ID   WP_155973900.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-184     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 70459..80929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS00425 (GUT184_00650) recA 71368..72510 (+) 1143 WP_024532325.1 recombinase RecA Machinery gene
  L6419_RS00430 (GUT184_00660) spx 73041..73439 (+) 399 WP_024532326.1 transcriptional regulator Spx -
  L6419_RS00435 (GUT184_00670) - 73543..73809 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  L6419_RS00440 (GUT184_00680) ruvX 73809..74228 (+) 420 WP_032537883.1 Holliday junction resolvase RuvX -
  L6419_RS00445 (GUT184_00690) - 74240..74545 (+) 306 WP_024532328.1 DUF1292 domain-containing protein -
  L6419_RS00450 - 74820..75366 (+) 547 Protein_70 nucleotidyltransferase family protein -
  L6419_RS00455 (GUT184_00720) comX/sigX 75459..75929 (+) 471 WP_155973900.1 sigma-70 family RNA polymerase sigma factor Regulator
  L6419_RS00460 (GUT184_00730) rpsJ 76463..76771 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  L6419_RS00465 (GUT184_00740) rplC 77037..77663 (+) 627 WP_024532330.1 50S ribosomal protein L3 -
  L6419_RS00470 (GUT184_00750) rplD 77688..78311 (+) 624 WP_024532331.1 50S ribosomal protein L4 -
  L6419_RS00475 (GUT184_00760) - 78311..78610 (+) 300 WP_024379978.1 50S ribosomal protein L23 -
  L6419_RS00480 (GUT184_00770) rplB 78628..79461 (+) 834 WP_024532332.1 50S ribosomal protein L2 -
  L6419_RS00485 (GUT184_00780) rpsS 79552..79833 (+) 282 WP_000533766.1 30S ribosomal protein S19 -
  L6419_RS00490 (GUT184_00790) rplV 79851..80195 (+) 345 WP_002936662.1 50S ribosomal protein L22 -
  L6419_RS00495 (GUT184_00800) rpsC 80208..80861 (+) 654 WP_024391478.1 30S ribosomal protein S3 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18982.97 Da        Isoelectric Point: 9.4931

>NTDB_id=91162 L6419_RS00455 WP_155973900.1 75459..75929(+) (comX/sigX) [Streptococcus ruminantium strain GUT-184]
MEFEKVYSKVKGIVHKARKDFYVKLWEKGDWEQEGMMVLFELLDTQPNLLEESDRLYCYFKVKFRNHIKDVIRKQESQKR
KFDRMAHEEIHGLSHMIQSPGLINDELLMLRAALREYRKNLSPSQQENYEKLMSGQCFNGRRKMIRDLQEYLKDFR

Nucleotide


Download         Length: 471 bp        

>NTDB_id=91162 L6419_RS00455 WP_155973900.1 75459..75929(+) (comX/sigX) [Streptococcus ruminantium strain GUT-184]
ATGGAATTTGAAAAGGTTTATTCAAAAGTGAAAGGGATCGTTCACAAGGCTCGTAAAGATTTTTATGTCAAACTATGGGA
AAAGGGAGACTGGGAGCAAGAAGGGATGATGGTCTTGTTTGAATTATTGGATACACAACCAAATCTCTTGGAGGAGTCTG
ATAGATTATACTGTTATTTCAAGGTGAAATTTAGAAACCATATCAAAGATGTGATTCGCAAACAAGAAAGTCAGAAGCGA
AAATTTGATCGAATGGCGCACGAAGAAATTCATGGTCTCTCACACATGATTCAATCACCTGGTCTAATCAATGATGAATT
ATTGATGCTGCGAGCTGCTTTGAGAGAGTACCGGAAAAATCTTTCACCGAGCCAGCAAGAAAATTATGAAAAACTCATGA
GTGGTCAATGTTTCAATGGTCGTCGCAAAATGATTCGTGACCTGCAGGAATACTTGAAAGATTTTCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

78.205

100

0.782
  comX/sigX Streptococcus suis isolate S10

77.564

100

0.776
  comX/sigX Streptococcus suis P1/7

77.564

100

0.776
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

52.903

99.359

0.526
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

52.903

99.359

0.526
  comX/sigX Streptococcus mutans UA159

45.161

99.359

0.449
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

45.098

98.077

0.442
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

45.098

98.077

0.442
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

44.444

98.077

0.436
  comX/comX2 Streptococcus pneumoniae TIGR4

44.371

96.795

0.429
  comX/comX1 Streptococcus pneumoniae TIGR4

44.371

96.795

0.429
  comX/comX2 Streptococcus pneumoniae R6

43.709

96.795

0.423
  comX/comX2 Streptococcus pneumoniae Rx1

43.709

96.795

0.423
  comX/comX1 Streptococcus pneumoniae Rx1

43.709

96.795

0.423
  comX/comX2 Streptococcus pneumoniae D39

43.709

96.795

0.423
  comX/comX1 Streptococcus pneumoniae D39

43.709

96.795

0.423
  comX/comX1 Streptococcus pneumoniae R6

43.709

96.795

0.423
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

43.137

98.077

0.423
  comX Streptococcus sobrinus strain NIDR 6715-7

41.83

98.077

0.41
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.49

100

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

39.355

99.359

0.391
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

39.355

99.359

0.391
  comX Streptococcus thermophilus LMD-9

39.869

98.077

0.391
  comX Streptococcus thermophilus LMG 18311

39.869

98.077

0.391
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

38.71

99.359

0.385
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

38.71

99.359

0.385
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

38.71

99.359

0.385
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

38.71

99.359

0.385
  comX/sigX Streptococcus salivarius strain HSISS4

37.908

98.077

0.372
  comX Streptococcus salivarius SK126

37.908

98.077

0.372

Multiple sequence alignment