Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   F6I35_RS10005 Genome accession   NZ_CP136160
Coordinates   1899349..1899822 (-) Length   157 a.a.
NCBI ID   WP_101750340.1    Uniprot ID   -
Organism   Streptococcus anginosus strain UMB8616     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1894349..1904822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I35_RS09985 (F6I35_0009980) - 1896050..1896511 (-) 462 WP_042754057.1 CtsR family transcriptional regulator -
  F6I35_RS09990 (F6I35_0009985) - 1896771..1897121 (+) 351 Protein_1926 hypothetical protein -
  F6I35_RS09995 (F6I35_0009990) tsf 1897208..1898251 (-) 1044 WP_003026508.1 translation elongation factor Ts -
  F6I35_RS10000 (F6I35_0009995) rpsB 1898334..1899116 (-) 783 WP_003026510.1 30S ribosomal protein S2 -
  F6I35_RS10005 (F6I35_0010000) comR/comR2 1899349..1899822 (-) 474 WP_101750340.1 sigma-70 family RNA polymerase sigma factor Regulator
  F6I35_RS10010 (F6I35_0010005) rplQ 1900249..1900635 (-) 387 WP_003026513.1 50S ribosomal protein L17 -
  F6I35_RS10015 (F6I35_0010010) - 1900647..1901585 (-) 939 WP_024053187.1 DNA-directed RNA polymerase subunit alpha -
  F6I35_RS10020 (F6I35_0010015) rpsK 1901630..1902013 (-) 384 WP_001118385.1 30S ribosomal protein S11 -
  F6I35_RS10025 (F6I35_0010020) rpsM 1902033..1902398 (-) 366 WP_002262317.1 30S ribosomal protein S13 -
  F6I35_RS10030 (F6I35_0010025) rpmJ 1902414..1902530 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  F6I35_RS10035 (F6I35_0010030) infA 1902555..1902773 (-) 219 WP_001029883.1 translation initiation factor IF-1 -
  F6I35_RS10040 (F6I35_0010035) - 1902889..1903527 (-) 639 WP_003031144.1 adenylate kinase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19266.05 Da        Isoelectric Point: 6.7302

>NTDB_id=888985 F6I35_RS10005 WP_101750340.1 1899349..1899822(-) (comR/comR2) [Streptococcus anginosus strain UMB8616]
MEFKELYAKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSQYPQLVEEESQLYVYYKTKFRNHILDILRKQESQKR
KLNRQAYEEVSEIGHKLSLKELYLDELVILRDQLNSYQAQLSPEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=888985 F6I35_RS10005 WP_101750340.1 1899349..1899822(-) (comR/comR2) [Streptococcus anginosus strain UMB8616]
ATGGAGTTCAAGGAGTTATATGCCAAGGTGAGAGGAATTGTGCTGAAGTGTCGGAGAGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGCATGTTGGTGCTCTATCAGTTGGTAAGCCAGTATCCGCAGCTGGTAGAAGAAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTCCGTAAACAGGAAAGTCAAAAACGC
AAACTTAATCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACAAGCTCAGCCTAAAAGAACTATATCTGGATGAATT
GGTGATTCTCCGAGACCAACTAAATAGCTATCAAGCTCAACTGAGCCCAGAGAAACAGGAGCAGTATGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCCATGATTCGAGAATTAAGAGCCTACTTAAAAGACTATAGCGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

59.615

99.363

0.592
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

59.615

99.363

0.592
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae Rx1

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae Rx1

52.597

98.089

0.516
  comX/comX2 Streptococcus pneumoniae D39

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae D39

52.597

98.089

0.516
  comX/comX2 Streptococcus pneumoniae R6

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae R6

52.597

98.089

0.516
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

52.597

98.089

0.516
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

51.948

98.089

0.51
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

51.948

98.089

0.51
  comX/sigX Streptococcus mutans UA159

49.359

99.363

0.49
  comX/sigX Streptococcus suis D9

48.387

98.726

0.478
  comX/sigX Streptococcus suis isolate S10

48.387

98.726

0.478
  comX/sigX Streptococcus suis P1/7

48.387

98.726

0.478
  comX Streptococcus salivarius SK126

46.104

98.089

0.452
  comX/sigX Streptococcus salivarius strain HSISS4

45.455

98.089

0.446
  comX Streptococcus thermophilus LMG 18311

45.455

98.089

0.446
  comX Streptococcus thermophilus LMD-9

45.455

98.089

0.446
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.103

99.363

0.389
  comX Streptococcus sobrinus strain NIDR 6715-7

37.013

98.089

0.363