Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   RRU92_RS03255 Genome accession   NZ_CP135436
Coordinates   650313..650777 (+) Length   154 a.a.
NCBI ID   WP_315640415.1    Uniprot ID   A0AA96MRI1
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 645313..655777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS03235 (RRU92_03235) - 645397..646851 (+) 1455 WP_315640411.1 virulence-associated E family protein -
  RRU92_RS03240 (RRU92_03240) - 647179..647325 (+) 147 WP_315640412.1 hypothetical protein -
  RRU92_RS03245 (RRU92_03245) - 647418..648569 (+) 1152 WP_410530773.1 phage major capsid protein -
  RRU92_RS03250 (RRU92_03250) - 648573..649403 (+) 831 WP_315640413.1 hypothetical protein -
  RRU92_RS03255 (RRU92_03255) comX/sigX/comX2/sigX2 650313..650777 (+) 465 WP_315640415.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 19121.84 Da        Isoelectric Point: 6.6496

>NTDB_id=886524 RRU92_RS03255 WP_315640415.1 650313..650777(+) (comX/sigX/comX2/sigX2) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MLEKYYEKVKGIVHRCRKDYYLHLWEKEDWDQEGLICLYELLEAHPELVEEEKKLYVYFKTKFRNRILDSVRKQESQKRR
LDRMAYEEVGEISHRLPEGGLWLDDYYALHELLNTYRRKLPEDKQEAYERLWADERFKGRKALLRELKETLQDF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=886524 RRU92_RS03255 WP_315640415.1 650313..650777(+) (comX/sigX/comX2/sigX2) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGCTTGAAAAGTATTATGAGAAGGTAAAAGGAATTGTCCATAGATGTCGAAAAGATTACTATCTCCACCTGTGGGAAAA
AGAGGATTGGGACCAAGAAGGACTGATCTGTCTCTATGAACTCCTCGAAGCCCATCCAGAATTAGTGGAAGAGGAAAAGA
AACTCTACGTCTACTTCAAAACAAAATTCCGCAATCGAATCCTAGATAGCGTCAGAAAGCAAGAGAGTCAAAAACGTCGC
CTAGACCGAATGGCCTACGAAGAAGTAGGGGAGATTAGCCATCGCCTACCAGAAGGAGGATTGTGGCTGGATGATTACTA
CGCCCTTCATGAATTGTTGAATACTTATAGAAGAAAGTTACCAGAAGATAAGCAAGAAGCCTATGAACGCCTCTGGGCAG
ACGAACGATTTAAAGGCCGCAAAGCCCTTCTCAGAGAGCTGAAGGAAACATTACAAGACTTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

61.039

100

0.61
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

60.39

100

0.604
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

59.091

100

0.591
  comX/comX2 Streptococcus pneumoniae D39

58.442

100

0.584
  comX/comX1 Streptococcus pneumoniae D39

58.442

100

0.584
  comX/comX2 Streptococcus pneumoniae R6

58.442

100

0.584
  comX/comX1 Streptococcus pneumoniae R6

58.442

100

0.584
  comX/comX2 Streptococcus pneumoniae Rx1

58.442

100

0.584
  comX/comX1 Streptococcus pneumoniae Rx1

58.442

100

0.584
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

58.442

100

0.584
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

58.17

99.351

0.578
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

58.17

99.351

0.578
  comX/comX2 Streptococcus pneumoniae TIGR4

57.792

100

0.578
  comX/comX1 Streptococcus pneumoniae TIGR4

57.792

100

0.578
  comX/sigX Streptococcus mutans UA159

49.673

99.351

0.494
  comX/sigX Streptococcus suis P1/7

49.02

99.351

0.487
  comX/sigX Streptococcus suis D9

49.02

99.351

0.487
  comX/sigX Streptococcus suis isolate S10

49.02

99.351

0.487
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

47.651

96.753

0.461
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

47.651

96.753

0.461
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

47.651

96.753

0.461
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

47.651

96.753

0.461
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

47.651

96.753

0.461
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

47.651

96.753

0.461
  comX Streptococcus sobrinus strain NIDR 6715-7

44.295

96.753

0.429
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

42.208

100

0.422
  comX/sigX Streptococcus salivarius strain HSISS4

43.624

96.753

0.422
  comX Streptococcus salivarius SK126

43.624

96.753

0.422
  comX Streptococcus thermophilus LMG 18311

41.722

98.052

0.409
  comX Streptococcus thermophilus LMD-9

41.722

98.052

0.409