Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   RMP67_RS00705 Genome accession   NZ_CP135087
Coordinates   123773..124243 (+) Length   156 a.a.
NCBI ID   WP_313920875.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 120949..123587 123773..124243 flank 186


Gene organization within MGE regions


Location: 120949..124243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS00695 (RMP67_00695) - 120949..122274 (-) 1326 Protein_118 transposase -
  RMP67_RS00700 (RMP67_00700) - 122477..123587 (+) 1111 Protein_119 IS630 family transposase -
  RMP67_RS00705 (RMP67_00705) comX/sigX 123773..124243 (+) 471 WP_313920875.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 19058.00 Da        Isoelectric Point: 9.5474

>NTDB_id=884855 RMP67_RS00705 WP_313920875.1 123773..124243(+) (comX/sigX) [Streptococcus suis strain ID26102]
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDKQVQLYCYFKVKFRNRIKDRIRKQESQKR
KFDRMPHEDIHELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMVRDLQIHLKDFR

Nucleotide


Download         Length: 471 bp        

>NTDB_id=884855 RMP67_RS00705 WP_313920875.1 123773..124243(+) (comX/sigX) [Streptococcus suis strain ID26102]
ATGGAATTCGAAAAAGTGTACGCAAGCGTCAAAGGTATTGTAAATAAGGCTCGAAAAGAGTTTTACATTAAACTATGGGA
TCGAGATGATTGGGAACAAGAAGGAATGATGACCTTGTTTGAATTATTGGAAGCTCAACCGTGGCTAGTTGATAAACAAG
TTCAATTATATTGTTATTTTAAAGTCAAGTTCAGAAATCGAATCAAAGATCGTATCCGCAAACAGGAAAGTCAAAAACGC
AAGTTTGACCGAATGCCACATGAAGATATTCACGAATTATCTCACGCAATACAATCACCGGGATTGATAAACGATGAATT
ATTAATGTTGAGAGGTGCCTTGAGAGATTATCGAAAAAATCTGAGCAATGATCAACTTGATAAATACGAAAAATTAATTA
GCGGACAATGTTTTAATGGTCGCCGTGAAATGGTACGTGATTTACAAATTCATTTGAAAGACTTTCGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus suis D9

98.718

100

0.987
  comX/sigX Streptococcus suis isolate S10

98.077

100

0.981
  comX/sigX Streptococcus suis P1/7

98.077

100

0.981
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

49.032

99.359

0.487
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

49.032

99.359

0.487
  comX/comX1 Streptococcus pneumoniae TIGR4

46.358

96.795

0.449
  comX/comX2 Streptococcus pneumoniae TIGR4

46.358

96.795

0.449
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

45.752

98.077

0.449
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

45.098

98.077

0.442
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

45.098

98.077

0.442
  comX/comX1 Streptococcus pneumoniae Rx1

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae D39

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae D39

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae R6

45.695

96.795

0.442
  comX/comX1 Streptococcus pneumoniae R6

45.695

96.795

0.442
  comX/comX2 Streptococcus pneumoniae Rx1

45.695

96.795

0.442
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

44.444

98.077

0.436
  comX/sigX Streptococcus mutans UA159

43.226

99.359

0.429
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40

99.359

0.397
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40

99.359

0.397
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.854

100

0.391
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

39.355

99.359

0.391
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

39.355

99.359

0.391
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

39.355

99.359

0.391
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

39.355

99.359

0.391
  comX Streptococcus thermophilus LMG 18311

39.869

98.077

0.391
  comX Streptococcus thermophilus LMD-9

39.869

98.077

0.391
  comX Streptococcus sobrinus strain NIDR 6715-7

39.869

98.077

0.391
  comX/sigX Streptococcus salivarius strain HSISS4

39.216

98.077

0.385
  comX Streptococcus salivarius SK126

39.216

98.077

0.385