Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   QZN14_RS00710 Genome accession   NZ_CP129875
Coordinates   102007..102486 (+) Length   159 a.a.
NCBI ID   WP_001204193.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 97007..107486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN14_RS00680 - 98195..98626 (+) 432 WP_000761051.1 hypothetical protein -
  QZN14_RS00685 - 98696..98899 (+) 204 WP_000840976.1 hypothetical protein -
  QZN14_RS00690 - 99050..99490 (+) 441 WP_000716196.1 hypothetical protein -
  QZN14_RS00695 - 99483..99827 (+) 345 WP_000073534.1 hypothetical protein -
  QZN14_RS00700 - 100617..101168 (+) 552 WP_000161849.1 nucleotidyltransferase family protein -
  QZN14_RS00705 - 101388..101807 (+) 420 WP_000784700.1 YjdF family protein -
  QZN14_RS00710 comX/sigX 102007..102486 (+) 480 WP_001204193.1 sigma-70 family RNA polymerase sigma factor Regulator
  QZN14_RS00715 - 102608..103300 (+) 693 WP_000049277.1 histidine phosphatase family protein -
  QZN14_RS00720 - 103297..104049 (+) 753 WP_000739666.1 M15 family metallopeptidase -
  QZN14_RS00725 - 104046..104621 (+) 576 WP_001231504.1 glucosaminidase domain-containing protein -
  QZN14_RS00730 hrcA 104764..105798 (+) 1035 WP_001873813.1 heat-inducible transcriptional repressor HrcA -
  QZN14_RS00735 grpE 105801..106373 (+) 573 WP_001869793.1 nucleotide exchange factor GrpE -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19473.36 Da        Isoelectric Point: 7.2741

>NTDB_id=855969 QZN14_RS00710 WP_001204193.1 102007..102486(+) (comX/sigX) [Streptococcus agalactiae COH1]
MRDFEELFDKVKPIVMKLRRNYFVQLWEYDDWIQEGRIVLFRLLEEHPYLLDNESKLFIYFKTKFSNYLNDVLRHQDCQK
RQFNKMPYEEISEVSHYVKSKGLVLDDYIAYRDTLTKVEETLSDIDKEKFEKLINGERFAGKKKFIRNIQPFFNAFKAD

Nucleotide


Download         Length: 480 bp        

>NTDB_id=855969 QZN14_RS00710 WP_001204193.1 102007..102486(+) (comX/sigX) [Streptococcus agalactiae COH1]
TTGAGAGATTTTGAGGAGTTGTTTGATAAAGTAAAGCCAATCGTAATGAAGCTGAGAAGAAATTATTTTGTTCAACTTTG
GGAATATGATGATTGGATTCAAGAAGGACGTATTGTACTTTTTAGGTTGCTTGAAGAGCATCCGTATTTATTGGATAATG
AAAGCAAACTATTCATTTACTTTAAAACAAAATTTTCAAATTATTTAAACGATGTATTAAGACACCAAGATTGTCAAAAG
CGACAATTTAATAAAATGCCTTATGAAGAAATCAGTGAAGTTAGTCATTATGTTAAGAGTAAAGGACTAGTTTTAGATGA
CTATATTGCTTATCGTGATACTTTAACAAAAGTGGAAGAAACTTTGTCAGATATTGATAAAGAAAAATTTGAAAAACTGA
TTAATGGTGAACGTTTTGCGGGGAAGAAAAAATTCATACGAAATATTCAACCTTTTTTCAATGCTTTTAAAGCGGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

56.688

98.742

0.56
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

52.349

93.711

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

52.349

93.711

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

52.349

93.711

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

52.349

93.711

0.491
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

52

94.34

0.491
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

52

94.34

0.491
  comX/sigX Streptococcus mutans UA159

49.032

97.484

0.478
  comX Streptococcus sobrinus strain NIDR 6715-7

42.949

98.113

0.421
  comX/sigX Streptococcus suis isolate S10

41.935

97.484

0.409
  comX/sigX Streptococcus suis P1/7

41.935

97.484

0.409
  comX/sigX Streptococcus suis D9

41.935

97.484

0.409
  comX Streptococcus thermophilus LMD-9

42.857

92.453

0.396
  comX Streptococcus thermophilus LMG 18311

42.857

92.453

0.396
  comX/sigX Streptococcus salivarius strain HSISS4

41.497

92.453

0.384
  comX Streptococcus salivarius SK126

41.497

92.453

0.384
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

39.216

96.226

0.377
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

39.216

96.226

0.377
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

39.216

96.226

0.377
  comX/comX1 Streptococcus pneumoniae D39

39.073

94.969

0.371
  comX/comX2 Streptococcus pneumoniae R6

39.073

94.969

0.371
  comX/comX1 Streptococcus pneumoniae R6

39.073

94.969

0.371
  comX/comX2 Streptococcus pneumoniae TIGR4

39.073

94.969

0.371
  comX/comX2 Streptococcus pneumoniae Rx1

39.073

94.969

0.371
  comX/comX1 Streptococcus pneumoniae Rx1

39.073

94.969

0.371
  comX/comX2 Streptococcus pneumoniae D39

39.073

94.969

0.371
  comX/comX1 Streptococcus pneumoniae TIGR4

39.073

94.969

0.371
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

38.562

96.226

0.371
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.562

96.226

0.371
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

37.908

96.226

0.365