Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   P7C00_RS27750 Genome accession   NZ_CP120724
Coordinates   6224295..6225623 (+) Length   442 a.a.
NCBI ID   WP_346635998.1    Uniprot ID   -
Organism   Pseudomonas sp. JDS08PS003     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6219295..6230623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7C00_RS27730 (P7C00_27630) pgeF 6220928..6221653 (-) 726 WP_404937696.1 peptidoglycan editing factor PgeF -
  P7C00_RS27735 (P7C00_27635) rluD 6221650..6222612 (-) 963 WP_102865461.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P7C00_RS27740 (P7C00_27640) - 6222763..6223785 (+) 1023 WP_346636000.1 outer membrane protein assembly factor BamD -
  P7C00_RS27745 (P7C00_27645) - 6223912..6224145 (+) 234 WP_346635999.1 PP0621 family protein -
  P7C00_RS27750 (P7C00_27650) pilR 6224295..6225623 (+) 1329 WP_346635998.1 sigma-54 dependent transcriptional regulator Regulator
  P7C00_RS27755 (P7C00_27655) thiO 6225620..6226720 (-) 1101 WP_404937697.1 glycine oxidase ThiO -
  P7C00_RS27760 (P7C00_27660) - 6226777..6227178 (-) 402 WP_346635996.1 type IV pilin protein -
  P7C00_RS27765 (P7C00_27665) - 6227194..6227466 (-) 273 WP_404937698.1 hypothetical protein -
  P7C00_RS27770 (P7C00_27670) - 6227699..6228139 (-) 441 WP_346635995.1 PilX N-terminal domain-containing pilus assembly protein -
  P7C00_RS27775 (P7C00_27675) - 6228181..6228891 (-) 711 WP_346635994.1 pilus assembly protein PilW -
  P7C00_RS27780 (P7C00_27680) pilV 6228888..6229331 (-) 444 WP_404937699.1 type IV pilus modification protein PilV -
  P7C00_RS27785 (P7C00_27685) - 6229730..6230254 (+) 525 WP_346635992.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49749.39 Da        Isoelectric Point: 8.0176

>NTDB_id=808416 P7C00_RS27750 WP_346635998.1 6224295..6225623(+) (pilR) [Pseudomonas sp. JDS08PS003]
MSPMHRVLVVDEATEVRALVEITLGRMRLHTQSARTLQEARAHLAREHFDLCLTDLHLPDGSGLDLLLHIRQCHPQLPVA
LLSDAPGMQARALEAGACDLLHKPLHPVRLREWISSRLKRLSTATKNLPEHQLLGDSLPMDNLRRHIDKLAPSLAAVYIS
GESGSGKERVARLIHQLGPRAREPFIPVNCGAIPGELMESEFFGHRKGSFSGALTDQPGLFQAAQGGTLFLDEVADLPLA
MQVKLLRALQEKSVRPLGSQEERAVDVRILCATHKDLKCEVESGRFRQDLYYRLNVIELRVPALRERPDDIGILARHILQ
RLADASDKPATQLHRQALQALERYDFPGNVRELENLLERAQTLCEGPWIELADLHLPVSENQAPPSPSRLPNLDLALHLQ
QVERHLLLQALEENRWNRTAAARRLSLSLRSMRYRMKKLGLD

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=808416 P7C00_RS27750 WP_346635998.1 6224295..6225623(+) (pilR) [Pseudomonas sp. JDS08PS003]
ATGAGCCCAATGCACAGGGTGCTGGTGGTCGATGAGGCCACGGAAGTCCGCGCCCTGGTGGAAATCACCCTCGGCCGCAT
GCGCCTGCACACCCAAAGTGCCCGCACCTTGCAGGAAGCCCGGGCTCACCTGGCCCGAGAGCACTTCGACCTGTGCCTGA
CCGACCTGCATCTGCCGGATGGCAGCGGACTGGATCTGCTGCTGCATATTCGCCAATGCCACCCTCAACTGCCGGTCGCG
CTTTTAAGCGATGCCCCTGGCATGCAGGCCAGAGCCCTGGAAGCCGGGGCTTGCGACCTGTTGCACAAGCCTCTTCACCC
CGTGCGCCTCCGAGAATGGATAAGCAGCAGGCTGAAACGGCTGTCCACTGCCACAAAAAACCTACCCGAGCATCAGTTGT
TGGGGGACTCACTGCCCATGGACAACCTGCGCCGACACATCGACAAGTTGGCCCCCAGCCTGGCGGCGGTCTACATCAGC
GGCGAATCCGGCAGTGGCAAAGAGCGAGTGGCACGCCTGATCCACCAGTTGGGCCCCAGGGCCAGGGAGCCCTTCATTCC
GGTCAACTGTGGGGCCATTCCTGGCGAATTGATGGAGAGTGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGCGGCGCCC
TGACTGATCAGCCCGGTCTGTTCCAGGCCGCTCAGGGGGGCACCCTGTTCCTCGACGAGGTCGCCGACCTGCCTCTTGCC
ATGCAGGTGAAGCTCCTGCGTGCGCTACAGGAAAAGTCCGTGCGCCCGCTAGGCAGCCAGGAGGAAAGAGCCGTCGATGT
GCGGATTCTCTGCGCCACTCACAAGGACCTGAAGTGCGAGGTAGAGTCCGGCCGCTTTCGCCAGGATCTCTACTACCGCC
TGAATGTCATCGAACTGCGAGTCCCCGCCCTGCGCGAGCGCCCGGACGATATCGGGATACTGGCGCGGCACATTCTGCAA
CGCCTGGCCGACGCCAGCGACAAGCCTGCCACCCAACTACACCGGCAAGCACTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAACGTACGTGAACTGGAGAACCTACTGGAACGGGCCCAGACCCTTTGCGAGGGCCCGTGGATTGAACTGGCCGACC
TGCATCTGCCTGTCAGTGAAAACCAGGCCCCCCCTTCTCCCTCGCGCCTCCCCAACCTGGACCTCGCGCTGCACCTGCAA
CAGGTGGAGCGCCATCTGCTGCTCCAGGCCCTGGAGGAAAATCGCTGGAACCGTACAGCGGCGGCCCGACGCCTGAGTCT
GTCCCTGCGTTCGATGCGTTACCGCATGAAAAAGCTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(7-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.486

100

0.618
  pilR Acinetobacter baumannii strain A118

46.187

100

0.48
  luxO Vibrio cholerae strain A1552

36.937

100

0.371